Detailed information NTG0186362

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BAU10_RS12360
• Genome accession: NZ_CP016224
• Coordinates: 2734653..2735639 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain ZJ-T
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2729653..2740639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAU10_RS12345 (BAU10_12345)	recA	2730198..2731241 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
BAU10_RS12350 (BAU10_12350)	pncC	2731442..2731924 (-)	483	WP_065274846.1	nicotinamide-nucleotide amidase	-
BAU10_RS12355 (BAU10_12355)	mutS	2732009..2734570 (+)	2562	WP_065274847.1	DNA mismatch repair protein MutS	-
BAU10_RS12360 (BAU10_12360)	rpoS	2734653..2735639 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
BAU10_RS12365 (BAU10_12365)	-	2735720..2736643 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
BAU10_RS12370 (BAU10_12370)	-	2736657..2737283 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BAU10_RS12375 (BAU10_12375)	surE	2737283..2738059 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
BAU10_RS12380 (BAU10_12380)	truD	2738059..2739102 (-)	1044	WP_065274848.1	tRNA pseudouridine(13) synthase TruD	-
BAU10_RS12385 (BAU10_12385)	ispF	2739148..2739624 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BAU10_RS12390 (BAU10_12390)	ispD	2739639..2740346 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BAU10_RS12395 (BAU10_12395)	ftsB	2740348..2740629 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=186362 BAU10_RS12360 WP_005380887.1 2734653..2735639(-) (rpoS) [Vibrio alginolyticus strain ZJ-T]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=186362 BAU10_RS12360 WP_005380887.1 2734653..2735639(-) (rpoS) [Vibrio alginolyticus strain ZJ-T]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854