Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BAU10_RS06930 Genome accession   NZ_CP016224
Coordinates   1528075..1529601 (-) Length   508 a.a.
NCBI ID   WP_065274521.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZJ-T     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523075..1534601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU10_RS06910 (BAU10_06910) - 1523094..1524524 (-) 1431 WP_065274518.1 lipopolysaccharide biosynthesis protein -
  BAU10_RS06915 (BAU10_06915) - 1524517..1525689 (-) 1173 WP_042522932.1 glycosyltransferase -
  BAU10_RS06920 (BAU10_06920) - 1525701..1526885 (-) 1185 WP_065274519.1 glycosyltransferase -
  BAU10_RS06925 (BAU10_06925) - 1527030..1528100 (-) 1071 WP_065274520.1 glycosyltransferase family 4 protein -
  BAU10_RS06930 (BAU10_06930) luxO 1528075..1529601 (-) 1527 WP_065274521.1 sigma-54-dependent transcriptional regulator Regulator
  BAU10_RS06935 (BAU10_06935) - 1529910..1530290 (-) 381 WP_065274522.1 Hpt domain-containing protein -
  BAU10_RS06940 (BAU10_06940) - 1530302..1530988 (-) 687 WP_005377635.1 AAA family ATPase -
  BAU10_RS06945 (BAU10_06945) - 1530988..1533090 (-) 2103 WP_065274523.1 SLBB domain-containing protein -
  BAU10_RS06950 (BAU10_06950) - 1533087..1533953 (-) 867 WP_065274524.1 OmpA family protein -
  BAU10_RS06955 (BAU10_06955) - 1533980..1534300 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56614.57 Da        Isoelectric Point: 5.9083

>NTDB_id=186350 BAU10_RS06930 WP_065274521.1 1528075..1529601(-) (luxO) [Vibrio alginolyticus strain ZJ-T]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESTNIAPITPPPVYTEELSPSAVEPSITAAELPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=186350 BAU10_RS06930 WP_065274521.1 1528075..1529601(-) (luxO) [Vibrio alginolyticus strain ZJ-T]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAACAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACTTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment