Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J51_RS05180 Genome accession   NZ_CP020423
Coordinates   876309..876815 (-) Length   168 a.a.
NCBI ID   WP_002219900.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 871309..881815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS05175 (A6J51_04975) polA 873371..876163 (-) 2793 WP_080611075.1 DNA polymerase I -
  A6J51_RS05180 (A6J51_04980) luxS 876309..876815 (-) 507 WP_002219900.1 S-ribosylhomocysteine lyase Regulator
  A6J51_RS05185 (A6J51_04985) - 876837..877256 (-) 420 WP_002240808.1 DUF2251 domain-containing protein -
  A6J51_RS05190 (A6J51_04990) - 877282..878298 (-) 1017 WP_002252788.1 YeiH family protein -
  A6J51_RS05195 (A6J51_04995) cyaY 878325..878648 (-) 324 WP_080611077.1 iron donor protein CyaY -
  A6J51_RS05200 (A6J51_05000) - 878719..878889 (+) 171 WP_003711159.1 LPS translocon maturation chaperone LptM -
  A6J51_RS05205 (A6J51_05005) lysA 878900..880120 (+) 1221 WP_080611080.1 diaminopimelate decarboxylase -
  A6J51_RS05210 (A6J51_05010) - 880180..880272 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6J51_RS05215 (A6J51_05015) - 880269..881804 (-) 1536 WP_002223111.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18669.39 Da        Isoelectric Point: 5.5451

>NTDB_id=186240 A6J51_RS05180 WP_002219900.1 876309..876815(-) (luxS) [Neisseria meningitidis strain FDAARGOS_212]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=186240 A6J51_RS05180 WP_002219900.1 876309..876815(-) (luxS) [Neisseria meningitidis strain FDAARGOS_212]
ATGCCCCTGTTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGATACCATTACCGTATTCGACCTGCGCTTTTGCGTTCCTAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762