Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   Q5O_RS24505 Genome accession   NZ_CP016212
Coordinates   5374950..5375351 (-) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida JB     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5369950..5380351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5O_RS24490 (Q5O_24490) - 5371914..5373938 (-) 2025 WP_223279128.1 methyl-accepting chemotaxis protein -
  Q5O_RS24495 (Q5O_24495) - 5373986..5374540 (-) 555 WP_010955559.1 chemotaxis protein CheW -
  Q5O_RS24500 (Q5O_24500) pilH 5374537..5374902 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  Q5O_RS24505 (Q5O_24505) pilG 5374950..5375351 (-) 402 WP_010955560.1 response regulator Regulator
  Q5O_RS24510 (Q5O_24510) gshB 5375590..5376543 (+) 954 WP_070384426.1 glutathione synthase -
  Q5O_RS24515 (Q5O_24515) - 5376635..5377540 (+) 906 WP_014592660.1 energy transducer TonB -
  Q5O_RS24520 (Q5O_24520) - 5377712..5378281 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  Q5O_RS24525 (Q5O_24525) ruvX 5378281..5378706 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  Q5O_RS24530 (Q5O_24530) pyrR 5378756..5379274 (+) 519 WP_014592661.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  Q5O_RS24535 (Q5O_24535) - 5379287..5380291 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=186221 Q5O_RS24505 WP_010955560.1 5374950..5375351(-) (pilG) [Pseudomonas putida JB]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=186221 Q5O_RS24505 WP_010955560.1 5374950..5375351(-) (pilG) [Pseudomonas putida JB]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGTTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTTGACAAGGCCCGTGGCCGGGTGGTCGGTTCCGATCAATTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment