Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   dqs_RS09165 Genome accession   NZ_CP016210
Coordinates   1978762..1980132 (+) Length   456 a.a.
NCBI ID   WP_065340269.1    Uniprot ID   -
Organism   Azoarcus olearius strain DQS-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973762..1985132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dqs_RS09135 (dqs_1860) - 1974026..1974355 (+) 330 WP_065340265.1 hypothetical protein -
  dqs_RS09140 (dqs_1861) tsaB 1974425..1975114 (+) 690 WP_065340266.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  dqs_RS09145 (dqs_1862) rimI 1975144..1975566 (+) 423 WP_065341684.1 ribosomal protein S18-alanine N-acetyltransferase -
  dqs_RS09150 (dqs_1863) - 1975563..1976414 (+) 852 WP_065340267.1 uracil-DNA glycosylase -
  dqs_RS09155 (dqs_1864) lplT 1976436..1977686 (-) 1251 WP_065340268.1 lysophospholipid transporter LplT -
  dqs_RS09160 (dqs_1865) - 1977842..1978762 (+) 921 WP_084018352.1 LysR family transcriptional regulator -
  dqs_RS09165 (dqs_1866) radA 1978762..1980132 (+) 1371 WP_065340269.1 DNA repair protein RadA Machinery gene
  dqs_RS09170 (dqs_1867) - 1980197..1980463 (-) 267 WP_065340270.1 hypothetical protein -
  dqs_RS20490 (dqs_1868) - 1980788..1981348 (+) 561 WP_084018355.1 DUF2795 domain-containing protein -
  dqs_RS20495 (dqs_1869) - 1981341..1982846 (+) 1506 WP_236778745.1 DUF4254 domain-containing protein -
  dqs_RS09185 (dqs_1870) - 1982849..1983982 (+) 1134 WP_065340271.1 glycosyltransferase family 9 protein -
  dqs_RS09190 (dqs_1871) - 1983906..1984964 (-) 1059 WP_065340272.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48438.73 Da        Isoelectric Point: 6.9502

>NTDB_id=186190 dqs_RS09165 WP_065340269.1 1978762..1980132(+) (radA) [Azoarcus olearius strain DQS-4]
MAKAKTVFVCTECGAQALRWQGQCPQCNAWNTLVESIAEPAPSAGSRFAALAGTTARLQALSELEPKEEPRTPTGIDEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALSHLAGTQAAVYVSGEESGEQVALRAQRLQLSASTLQLLAEINLERILAT
LREAKPRVAVIDSIQTIYSEALQSAPGSVAQVRECAAQLTRYAKQSGTALIIVGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHAERVSGSCVLITQEGTRPLLVEIQALVDAAHSPN
PRRLSVGLEQTRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKIAEPAADLAILLAIVSSLRDKPLKHGLAVFGEVGLAGE
IRPAPRGQERLKEAAKLGFSAAIVPRANLPRQAIDGLQVIGVDRIEEALERVRELE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=186190 dqs_RS09165 WP_065340269.1 1978762..1980132(+) (radA) [Azoarcus olearius strain DQS-4]
ATGGCCAAGGCGAAGACGGTTTTCGTCTGCACCGAATGCGGTGCGCAGGCGCTGCGCTGGCAGGGCCAGTGTCCGCAATG
CAATGCCTGGAACACCCTGGTCGAGAGCATCGCCGAGCCCGCCCCCAGCGCCGGCTCGCGCTTCGCCGCGCTGGCGGGCA
CCACCGCCCGGCTGCAGGCGCTGTCCGAACTCGAACCCAAGGAGGAGCCGCGCACGCCCACGGGCATCGACGAATTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCGGGCGGCGTGGTATTGATCGGCGGCGACCCCGGCATCGGCAAATCCACACTGCT
GCTGCAGGCGCTGTCGCACCTGGCCGGCACGCAGGCGGCGGTCTATGTCAGCGGTGAAGAGTCCGGCGAGCAGGTGGCGC
TGCGCGCGCAACGCCTGCAACTGTCGGCCAGCACGCTGCAACTGCTGGCCGAGATCAACCTGGAACGCATCCTCGCCACG
CTGCGCGAGGCCAAGCCGCGCGTCGCGGTGATCGACTCGATCCAGACCATCTATTCCGAAGCGCTGCAATCCGCGCCCGG
CTCGGTTGCGCAGGTGCGCGAGTGCGCCGCCCAGCTCACCCGCTACGCCAAGCAGAGCGGCACCGCGCTGATCATCGTGG
GCCACGTCACCAAGGACGGCGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATCGTCGATACCGTGCTGTACTTCGAGGGC
GATACCCACTCCAGCTTCCGGCTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCGGTGAACGAACTCGGCGTGTTCGCGAT
GACCGAGCGCGGCCTGCGCGGGGTCTCCAATCCGTCGGCGATCTTCCTGTCGCAGCACGCCGAGCGCGTTTCCGGCAGCT
GCGTGCTGATCACGCAGGAGGGCACGCGCCCGCTGCTGGTCGAAATCCAGGCGCTGGTCGACGCCGCTCACAGCCCCAAC
CCGCGCCGCCTCAGCGTGGGGCTGGAGCAGACCCGGCTGGCGATGCTGCTCGCGGTGCTGCACCGTCACGCCGGCATCGT
CTGTTTCGACCAGGACGTGTTCGTCAATGCGGTCGGCGGGGTCAAGATCGCCGAACCGGCGGCCGATCTGGCGATCCTGC
TCGCCATCGTGTCTTCGCTGCGCGACAAGCCCTTGAAGCACGGCCTCGCGGTGTTTGGCGAAGTCGGCCTGGCGGGCGAA
ATCCGGCCCGCGCCGCGCGGGCAGGAGCGGCTGAAGGAGGCGGCCAAGCTCGGTTTCTCCGCCGCCATCGTGCCGCGCGC
CAACCTGCCGCGCCAGGCCATCGACGGCCTGCAGGTAATCGGCGTAGACCGCATCGAGGAAGCACTGGAGCGCGTGCGCG
AGCTGGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.561

0.498
  radA Streptococcus mitis SK321

46.711

100

0.467
  radA Streptococcus pneumoniae D39

46.389

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.465
  radA Streptococcus pneumoniae R6

46.389

100

0.465
  radA Streptococcus pneumoniae Rx1

46.389

100

0.465
  radA Streptococcus mitis NCTC 12261

46.171

100

0.463

Multiple sequence alignment