Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BAY41_RS16590 Genome accession   NZ_CP016182
Coordinates   3209300..3209929 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC590     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204300..3214929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY41_RS16575 (BAY41_15955) helD 3204542..3206596 (-) 2055 WP_001295354.1 DNA helicase IV -
  BAY41_RS16580 (BAY41_15960) yccF 3206719..3207165 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BAY41_RS16585 (BAY41_15965) yccS 3207175..3209337 (+) 2163 WP_000875058.1 YccS family putative transporter -
  BAY41_RS16590 (BAY41_15970) sxy/tfoX 3209300..3209929 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BAY41_RS16595 (BAY41_15975) sulA 3210148..3210657 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BAY41_RS16605 (BAY41_15985) ompA 3211014..3212054 (+) 1041 WP_001400178.1 porin OmpA -
  BAY41_RS16610 (BAY41_15990) matP 3212130..3212582 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BAY41_RS16615 (BAY41_15995) ycbZ 3212768..3214528 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=186138 BAY41_RS16590 WP_000839153.1 3209300..3209929(-) (sxy/tfoX) [Escherichia coli strain EC590]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=186138 BAY41_RS16590 WP_000839153.1 3209300..3209929(-) (sxy/tfoX) [Escherichia coli strain EC590]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment