Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   A6E01_RS14380 Genome accession   NZ_CP016178
Coordinates   294388..295479 (+) Length   363 a.a.
NCBI ID   WP_065210526.1    Uniprot ID   A0AAN0XX38
Organism   Vibrio breoganii strain FF50     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 289388..300479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS14355 (A6E01_14355) - 289655..290992 (-) 1338 WP_065210522.1 sigma-54-dependent transcriptional regulator -
  A6E01_RS14360 (A6E01_14360) - 290995..292764 (-) 1770 WP_065210523.1 sensor histidine kinase -
  A6E01_RS14365 (A6E01_14365) - 292928..293242 (-) 315 WP_017029875.1 DUF496 family protein -
  A6E01_RS14370 (A6E01_14370) - 293451..294104 (+) 654 WP_065210524.1 YceH family protein -
  A6E01_RS14375 (A6E01_14375) - 294116..294391 (+) 276 WP_065210525.1 GIY-YIG nuclease family protein -
  A6E01_RS14380 (A6E01_14380) luxP 294388..295479 (+) 1092 WP_065210526.1 substrate-binding domain-containing protein Regulator
  A6E01_RS14385 (A6E01_14385) - 295482..298010 (+) 2529 WP_065210527.1 LuxQ periplasmic sensor domain-containing protein -
  A6E01_RS14390 (A6E01_14390) - 298004..298963 (+) 960 WP_065210528.1 hypothetical protein -
  A6E01_RS14395 (A6E01_14395) - 298982..299809 (-) 828 WP_065210529.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41769.26 Da        Isoelectric Point: 4.6996

>NTDB_id=186094 A6E01_RS14380 WP_065210526.1 294388..295479(+) (luxP) [Vibrio breoganii strain FF50]
MKLLLVGALLSFSAFQCFAENMILREYWEYDLYLDEHPEQKKLTEEMEKRIYQAPVPLAIQQQRPVKIDIVYPGSQLSDY
WWRNIKTLELRLQELGIEYELNKYSSRPNLDYRQESESLQQVLKNNSDYLIFTLDTSRHKKFAESVMSNPNTKLILLNIT
TPIKRWGEKQPLMYVGFDHFRGTQLLANEYKKMFPNSADYGLVYFSPGYISEARGDTFVKYLKDDGDYSLKRAYFTKANR
ETAYQATLSMIEQEGNLDFIYASSTDIAFGVTDALSELGREDIAVNGWGGGSEIEAVQSGLLDFTVVRINDDTGLAMAEA
IKLDLQNDPVPLVYSGEYQVFTKNDESSLAEALKLKAFRYSNR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=186094 A6E01_RS14380 WP_065210526.1 294388..295479(+) (luxP) [Vibrio breoganii strain FF50]
ATGAAGCTGTTGCTGGTAGGGGCGCTGTTGTCATTTTCAGCTTTTCAATGTTTTGCCGAGAACATGATACTTCGCGAGTA
TTGGGAGTATGACTTGTATTTGGACGAGCATCCTGAACAAAAAAAATTAACCGAAGAAATGGAGAAGCGTATATATCAAG
CGCCTGTTCCTTTGGCTATACAGCAACAGCGCCCAGTTAAAATCGATATCGTTTATCCCGGTTCACAGCTATCTGACTAC
TGGTGGCGCAATATTAAGACCCTAGAACTTAGACTGCAGGAGCTCGGTATCGAATACGAGCTGAATAAATATTCTTCGCG
CCCTAATTTGGACTATCGACAAGAAAGTGAAAGCCTGCAACAGGTACTAAAAAACAACTCTGACTATTTGATTTTCACTC
TGGATACAAGCAGACACAAGAAGTTTGCTGAGAGTGTGATGAGCAATCCTAACACCAAGTTGATTCTTCTCAATATTACG
ACTCCAATTAAACGGTGGGGAGAAAAACAGCCTTTAATGTACGTTGGCTTTGACCACTTTAGAGGGACTCAATTATTAGC
TAACGAATATAAGAAAATGTTTCCAAATTCTGCGGATTACGGCTTGGTTTATTTTTCACCAGGCTATATCAGCGAAGCTC
GAGGAGACACCTTTGTTAAGTACTTAAAAGATGACGGGGATTATTCGTTAAAACGAGCGTATTTTACCAAAGCCAATCGA
GAGACAGCGTATCAGGCGACTTTGTCGATGATAGAGCAGGAGGGTAATCTCGATTTTATCTACGCAAGCTCAACAGATAT
AGCGTTTGGTGTGACAGATGCGCTGTCTGAACTAGGTAGAGAAGACATTGCAGTCAATGGTTGGGGTGGTGGCTCAGAGA
TTGAAGCAGTTCAAAGTGGATTGTTGGATTTTACCGTAGTGAGAATAAATGATGACACAGGGCTAGCGATGGCAGAAGCC
ATCAAACTCGATCTGCAAAATGACCCTGTGCCTTTGGTATATTCGGGAGAATATCAAGTGTTCACCAAAAATGACGAATC
CAGTCTAGCAGAAGCCTTGAAACTCAAGGCATTCCGATATTCCAATAGGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(78-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

51.781

100

0.521

Multiple sequence alignment