Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6E01_RS10700 Genome accession   NZ_CP016177
Coordinates   2328916..2329431 (-) Length   171 a.a.
NCBI ID   WP_017027430.1    Uniprot ID   A0A511QWJ9
Organism   Vibrio breoganii strain FF50     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2323916..2334431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS10675 (A6E01_10675) rimM 2324116..2324646 (-) 531 WP_017027437.1 ribosome maturation factor RimM -
  A6E01_RS10680 (A6E01_10680) rpsP 2324682..2324930 (-) 249 WP_017027436.1 30S ribosomal protein S16 -
  A6E01_RS10685 (A6E01_10685) ffh 2325172..2326563 (-) 1392 WP_017027435.1 signal recognition particle protein -
  A6E01_RS10690 (A6E01_10690) - 2326714..2327508 (+) 795 WP_017027432.1 cytochrome C assembly family protein -
  A6E01_RS10695 (A6E01_10695) - 2327584..2328846 (+) 1263 WP_017027431.1 HlyC/CorC family transporter -
  A6E01_RS10700 (A6E01_10700) luxS 2328916..2329431 (-) 516 WP_017027430.1 S-ribosylhomocysteine lyase Regulator
  A6E01_RS10705 (A6E01_10705) gshA 2329448..2331019 (-) 1572 WP_065210370.1 glutamate--cysteine ligase -
  A6E01_RS10710 (A6E01_10710) - 2331118..2334006 (-) 2889 WP_017243659.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18769.36 Da        Isoelectric Point: 4.4345

>NTDB_id=186085 A6E01_RS10700 WP_017027430.1 2328916..2329431(-) (luxS) [Vibrio breoganii strain FF50]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSERGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSESDVATAWVASMEDVLKVEGQNKIPELNEYQCGTADMHSLEEAKAIASAILEAGVSVNKNDELA
LPEEMLQTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=186085 A6E01_RS10700 WP_017027430.1 2328916..2329431(-) (luxS) [Vibrio breoganii strain FF50]
ATGCCCCTATTAGACAGTTTTACAGTTGACCACACAAAAATGAATGCACCAGCAGTGCGTGTGGCAAAAACGATGCAGAC
TCCAAGTGGCGATACTATTACAGTATTCGACCTTCGCTTCACTCAACCAAACAAAGATATCCTTTCAGAAAGAGGGATTC
ATACACTTGAGCACCTTTACGCGGGTTTCATGCGTAACCATCTAAATGGTGATTCTGTTGAGATCATCGATATCTCTCCA
ATGGGTTGCCGCACAGGCTTTTACATGAGCCTGATTGGTACGCCATCAGAATCTGATGTAGCTACTGCATGGGTTGCCTC
AATGGAAGACGTACTTAAGGTTGAGGGACAAAACAAGATCCCTGAGCTGAATGAATATCAATGTGGCACTGCAGATATGC
ACTCTCTAGAAGAAGCGAAAGCCATTGCTAGCGCTATTTTAGAAGCGGGCGTATCAGTGAACAAAAATGATGAGCTTGCA
CTGCCAGAAGAGATGCTACAAACGCTTAAGGTGTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A511QWJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

100

0.842

Multiple sequence alignment