Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | A9494_RS00840 | Genome accession | NZ_CP016175 |
| Coordinates | 123621..124574 (+) | Length | 317 a.a. |
| NCBI ID | WP_011922562.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain LSM102 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 118621..129574
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9494_RS00800 (A9494_00780) | - | 118891..119834 (-) | 944 | Protein_115 | S66 family peptidase | - |
| A9494_RS00805 (A9494_00785) | comYA | 119920..120870 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A9494_RS00810 (A9494_00790) | comYB | 120782..121819 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A9494_RS00815 (A9494_00795) | comYC | 121821..122102 (+) | 282 | WP_011921720.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A9494_RS00820 (A9494_00800) | comGD | 122083..122490 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| A9494_RS00825 (A9494_00805) | comYE | 122462..122755 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| A9494_RS00830 (A9494_00810) | comGF/cglF | 122742..123176 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A9494_RS00835 (A9494_00815) | comGG | 123154..123564 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| A9494_RS00840 (A9494_00820) | comYH | 123621..124574 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A9494_RS00845 (A9494_00825) | - | 124624..125811 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| A9494_RS00850 (A9494_00830) | - | 126126..126677 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
| A9494_RS00855 (A9494_00835) | - | 126733..127989 (+) | 1257 | WP_011921729.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| A9494_RS00860 (A9494_00840) | pepA | 128036..129097 (-) | 1062 | WP_011921730.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35776.92 Da Isoelectric Point: 4.5177
>NTDB_id=186007 A9494_RS00840 WP_011922562.1 123621..124574(+) (comYH) [Streptococcus suis strain LSM102]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=186007 A9494_RS00840 WP_011922562.1 123621..124574(+) (comYH) [Streptococcus suis strain LSM102]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |