Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A6J48_RS01080 Genome accession   NZ_CP020420
Coordinates   215510..216127 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210510..221127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS01065 (A6J48_01080) - 211693..213321 (-) 1629 WP_002237008.1 ABC-F family ATPase -
  A6J48_RS01070 (A6J48_01085) - 213471..213845 (+) 375 WP_002237007.1 arsenate reductase -
  A6J48_RS01075 (A6J48_01090) - 213905..215443 (+) 1539 WP_002241585.1 SurA N-terminal domain-containing protein -
  A6J48_RS01080 (A6J48_01095) recR 215510..216127 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  A6J48_RS01085 (A6J48_01100) - 216183..216461 (-) 279 WP_002213502.1 hypothetical protein -
  A6J48_RS01090 (A6J48_01110) - 216666..217913 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  A6J48_RS01095 (A6J48_01115) lolD 217906..218601 (+) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6J48_RS01100 (A6J48_01120) recD 218669..220414 (+) 1746 WP_082308603.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=186007 A6J48_RS01080 WP_002217147.1 215510..216127(+) (recR) [Neisseria meningitidis strain FDAARGOS_209]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=186007 A6J48_RS01080 WP_002217147.1 215510..216127(+) (recR) [Neisseria meningitidis strain FDAARGOS_209]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTTGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment