Detailed information
Bioinformatically predicted
Overview
| Name | comYE | Type | Machinery gene |
| Locus tag | A9494_RS00825 | Genome accession | NZ_CP016175 |
| Coordinates | 122462..122755 (+) | Length | 97 a.a. |
| NCBI ID | WP_011921722.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain LSM102 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 117462..127755
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9494_RS00795 (A9494_00775) | - | 118491..118856 (+) | 366 | WP_002936568.1 | DUF1033 family protein | - |
| A9494_RS00800 (A9494_00780) | - | 118891..119834 (-) | 944 | Protein_115 | S66 family peptidase | - |
| A9494_RS00805 (A9494_00785) | comYA | 119920..120870 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A9494_RS00810 (A9494_00790) | comYB | 120782..121819 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A9494_RS00815 (A9494_00795) | comYC | 121821..122102 (+) | 282 | WP_011921720.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A9494_RS00820 (A9494_00800) | comGD | 122083..122490 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| A9494_RS00825 (A9494_00805) | comYE | 122462..122755 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| A9494_RS00830 (A9494_00810) | comGF/cglF | 122742..123176 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A9494_RS00835 (A9494_00815) | comGG | 123154..123564 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| A9494_RS00840 (A9494_00820) | comYH | 123621..124574 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A9494_RS00845 (A9494_00825) | - | 124624..125811 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| A9494_RS00850 (A9494_00830) | - | 126126..126677 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10817.70 Da Isoelectric Point: 9.8348
>NTDB_id=186005 A9494_RS00825 WP_011921722.1 122462..122755(+) (comYE) [Streptococcus suis strain LSM102]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
Nucleotide
Download Length: 294 bp
>NTDB_id=186005 A9494_RS00825 WP_011921722.1 122462..122755(+) (comYE) [Streptococcus suis strain LSM102]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYE | Streptococcus mutans UA140 |
51.546 |
100 |
0.515 |
| comYE | Streptococcus mutans UA159 |
51.546 |
100 |
0.515 |
| comGE/cglE | Streptococcus pneumoniae Rx1 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae D39 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae R6 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae TIGR4 |
38.043 |
94.845 |
0.361 |