Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BAU08_RS00645 Genome accession   NZ_CP016171
Coordinates   146626..148062 (+) Length   478 a.a.
NCBI ID   WP_066342912.1    Uniprot ID   A0A193FBX7
Organism   Bordetella bronchialis strain AU17976     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141626..153062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU08_RS00625 (BAU08_00625) - 142564..143523 (+) 960 WP_197513467.1 RHS repeat-associated core domain-containing protein -
  BAU08_RS00630 (BAU08_00630) leuA 143605..145320 (-) 1716 WP_066342884.1 2-isopropylmalate synthase -
  BAU08_RS00635 (BAU08_00635) - 145526..145750 (-) 225 WP_156770115.1 hypothetical protein -
  BAU08_RS00640 (BAU08_00640) - 145851..146627 (-) 777 WP_082987892.1 hypothetical protein -
  BAU08_RS00645 (BAU08_00645) rpoN/rpoN1 146626..148062 (+) 1437 WP_066342912.1 RNA polymerase factor sigma-54 Machinery gene
  BAU08_RS00650 (BAU08_00650) - 148161..149120 (+) 960 WP_231934878.1 RHS repeat-associated core domain-containing protein -
  BAU08_RS26490 - 149214..149489 (+) 276 WP_082987893.1 (2Fe-2S)-binding protein -
  BAU08_RS00655 (BAU08_00655) - 149435..150349 (-) 915 WP_066667652.1 LysR family transcriptional regulator -
  BAU08_RS00660 (BAU08_00660) - 150474..151388 (+) 915 WP_066342927.1 DMT family transporter -
  BAU08_RS00665 (BAU08_00665) bfr 151602..152078 (+) 477 WP_066357607.1 bacterioferritin -
  BAU08_RS00670 (BAU08_00670) - 152100..152789 (-) 690 WP_066342929.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52704.18 Da        Isoelectric Point: 5.7852

>NTDB_id=185956 BAU08_RS00645 WP_066342912.1 146626..148062(+) (rpoN/rpoN1) [Bordetella bronchialis strain AU17976]
MQNIVPMTRHALELRPGQHLALTPQLQQSIRMLQLSTLALEAEISQALDENPLLERDEDHAPDDIDPDREDTAHDDPAPE
REAAVDEMPGAKGVHGDDDHDMPEAARGETLREHLLAQLALTRASRRDAALVALLIDELDDNGYLGSPLEEILGWLPPEV
EADIDELRAALRLLQSFDPPGIGARDMAECLALQLRNPDPATLPEAADPAVLACARRVCAEHLPLLAVSNPARLREALQC
DDAMVRRARALILKLDPRPGRRWTVPVADYAIPDVIVRKGRKGWRVVLNSAAMPRLRINGVYAQMLGNQREGSHSALHAQ
LQQARWMIRNVEQRFDTILRVAQAIVDHQSAFFSQGPSAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTMELKDF
FGAGVATDSGDAASATAVQAHIKRLVAEENRAKPLSDNQLMQKLAEQGIVIARRTVAKYRESMRIAPASVRKAQAALR

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=185956 BAU08_RS00645 WP_066342912.1 146626..148062(+) (rpoN/rpoN1) [Bordetella bronchialis strain AU17976]
ATGCAAAATATTGTACCTATGACTCGTCACGCCCTTGAACTCCGGCCCGGGCAACATCTGGCCCTGACCCCGCAGCTGCA
GCAGTCCATCCGGATGCTGCAGCTGTCGACGCTCGCCCTGGAGGCCGAGATCTCCCAGGCGCTGGACGAGAATCCCCTGC
TGGAGCGCGACGAGGACCACGCCCCGGACGACATCGATCCCGACCGCGAGGATACGGCGCACGACGATCCGGCCCCGGAA
CGCGAAGCCGCCGTGGACGAAATGCCCGGCGCCAAGGGCGTCCATGGGGATGACGATCACGACATGCCCGAGGCCGCGCG
CGGCGAAACCCTGCGCGAACACCTGCTGGCGCAGCTGGCGCTTACCCGCGCCAGCCGCCGCGACGCGGCGCTGGTCGCGC
TGCTTATCGACGAACTGGACGACAACGGCTACCTGGGCTCGCCGCTGGAAGAAATCCTGGGATGGTTGCCGCCCGAAGTA
GAGGCCGACATCGATGAGCTGCGGGCCGCCCTGCGCCTGCTGCAATCCTTCGACCCGCCGGGCATCGGCGCGCGCGACAT
GGCGGAGTGCCTGGCCCTGCAATTGCGCAATCCCGACCCCGCCACACTCCCGGAAGCCGCCGATCCCGCGGTGCTGGCGT
GCGCGCGCCGCGTCTGCGCCGAGCACCTGCCGCTGCTTGCCGTCAGCAACCCGGCGCGCTTGCGCGAGGCCTTGCAGTGC
GATGACGCCATGGTGCGCCGGGCGCGCGCCCTGATCCTCAAGCTCGATCCGCGGCCCGGCCGCCGCTGGACGGTTCCCGT
GGCGGACTATGCCATTCCGGACGTCATCGTGCGCAAGGGCCGCAAGGGATGGCGCGTGGTGCTGAACAGCGCCGCCATGC
CGCGCCTGCGCATCAACGGGGTCTACGCGCAGATGCTGGGCAACCAGCGCGAGGGCAGCCATTCCGCCCTGCACGCGCAA
CTGCAGCAGGCGCGCTGGATGATCCGAAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCCATCGTCGA
CCACCAGTCGGCCTTCTTCAGCCAGGGCCCCTCCGCCATGCGTCCCTTGATTCTCAAGGATATTGCCGGAGAGCTGGGGC
TGCACGAGTCCACGATATCCCGGGCCACGACCCAGAAGTACATGCTTACTCCGTTCGGCACGATGGAGCTGAAGGACTTC
TTCGGCGCCGGTGTGGCCACCGATAGCGGCGACGCCGCGTCCGCGACGGCCGTGCAGGCCCACATCAAGCGCCTGGTGGC
GGAAGAAAACCGCGCCAAGCCGCTGTCGGACAACCAGCTTATGCAAAAGCTGGCCGAGCAGGGCATCGTGATCGCCCGCC
GCACCGTGGCCAAATACCGGGAATCGATGCGCATCGCCCCGGCCTCGGTGCGCAAGGCGCAGGCGGCGCTGCGTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-472)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(105-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.835

100

0.508

Multiple sequence alignment