Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BAU06_RS00655 Genome accession   NZ_CP016170
Coordinates   148318..149754 (+) Length   478 a.a.
NCBI ID   WP_066342912.1    Uniprot ID   A0A193FBX7
Organism   Bordetella bronchialis strain AU3182     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143318..154754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU06_RS00635 (BAU06_00635) - 144230..145189 (+) 960 WP_231933965.1 RHS repeat-associated core domain-containing protein -
  BAU06_RS00640 (BAU06_00640) leuA 145267..146982 (-) 1716 WP_066342884.1 2-isopropylmalate synthase -
  BAU06_RS00645 (BAU06_00645) - 147188..147412 (-) 225 WP_156770115.1 hypothetical protein -
  BAU06_RS00650 (BAU06_00650) - 147513..148319 (-) 807 WP_082993463.1 hypothetical protein -
  BAU06_RS00655 (BAU06_00655) rpoN/rpoN1 148318..149754 (+) 1437 WP_066342912.1 RNA polymerase factor sigma-54 Machinery gene
  BAU06_RS00660 (BAU06_00660) - 149873..150832 (+) 960 WP_231933966.1 RHS repeat-associated core domain-containing protein -
  BAU06_RS25905 - 150925..151200 (+) 276 WP_082987893.1 (2Fe-2S)-binding protein -
  BAU06_RS00665 (BAU06_00665) - 151146..152060 (-) 915 WP_066342922.1 LysR family transcriptional regulator -
  BAU06_RS00670 (BAU06_00670) - 152185..153099 (+) 915 WP_066342927.1 DMT family transporter -
  BAU06_RS00675 (BAU06_00675) bfr 153313..153789 (+) 477 WP_066357607.1 bacterioferritin -
  BAU06_RS00680 (BAU06_00680) - 153811..154500 (-) 690 WP_066342929.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52704.18 Da        Isoelectric Point: 5.7852

>NTDB_id=185941 BAU06_RS00655 WP_066342912.1 148318..149754(+) (rpoN/rpoN1) [Bordetella bronchialis strain AU3182]
MQNIVPMTRHALELRPGQHLALTPQLQQSIRMLQLSTLALEAEISQALDENPLLERDEDHAPDDIDPDREDTAHDDPAPE
REAAVDEMPGAKGVHGDDDHDMPEAARGETLREHLLAQLALTRASRRDAALVALLIDELDDNGYLGSPLEEILGWLPPEV
EADIDELRAALRLLQSFDPPGIGARDMAECLALQLRNPDPATLPEAADPAVLACARRVCAEHLPLLAVSNPARLREALQC
DDAMVRRARALILKLDPRPGRRWTVPVADYAIPDVIVRKGRKGWRVVLNSAAMPRLRINGVYAQMLGNQREGSHSALHAQ
LQQARWMIRNVEQRFDTILRVAQAIVDHQSAFFSQGPSAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTMELKDF
FGAGVATDSGDAASATAVQAHIKRLVAEENRAKPLSDNQLMQKLAEQGIVIARRTVAKYRESMRIAPASVRKAQAALR

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=185941 BAU06_RS00655 WP_066342912.1 148318..149754(+) (rpoN/rpoN1) [Bordetella bronchialis strain AU3182]
ATGCAAAATATTGTACCTATGACTCGTCACGCCCTTGAACTCCGGCCCGGGCAACATCTGGCCCTGACCCCGCAGCTGCA
GCAGTCCATCCGGATGCTGCAGCTGTCGACGCTCGCCCTGGAGGCCGAGATCTCCCAGGCGCTGGACGAGAATCCCCTGC
TGGAGCGCGACGAGGACCACGCCCCGGACGACATCGATCCCGACCGCGAGGATACGGCGCACGACGATCCGGCCCCGGAA
CGCGAAGCCGCCGTGGACGAAATGCCCGGCGCCAAGGGCGTCCATGGGGATGACGATCACGACATGCCCGAGGCCGCGCG
CGGCGAAACCCTGCGCGAACACCTGCTGGCGCAGCTGGCGCTTACCCGCGCCAGCCGCCGCGACGCGGCGCTGGTCGCGC
TGCTTATCGACGAACTGGACGACAACGGCTACCTGGGCTCGCCGCTGGAAGAAATCCTGGGATGGTTGCCGCCCGAAGTA
GAGGCCGACATCGACGAGCTGCGGGCCGCCCTGCGCCTGCTGCAATCCTTCGACCCGCCGGGCATCGGCGCGCGCGACAT
GGCGGAGTGCCTGGCCCTGCAATTGCGCAATCCCGACCCCGCCACACTCCCGGAAGCCGCCGATCCCGCGGTGCTGGCGT
GCGCGCGCCGCGTCTGCGCCGAGCACCTGCCGCTGCTTGCCGTCAGCAACCCGGCGCGCTTGCGCGAGGCCTTGCAGTGC
GATGACGCCATGGTGCGCCGGGCGCGCGCCCTGATCCTCAAGCTCGATCCGCGGCCCGGCCGCCGCTGGACGGTTCCCGT
GGCGGACTATGCCATTCCGGACGTCATCGTGCGCAAGGGCCGCAAGGGGTGGCGCGTGGTGCTGAACAGCGCCGCCATGC
CGCGCCTGCGCATCAACGGGGTCTACGCGCAGATGCTGGGCAACCAGCGCGAGGGCAGCCATTCCGCCCTGCACGCGCAA
CTGCAGCAGGCGCGCTGGATGATCCGAAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCCATCGTCGA
CCACCAGTCGGCCTTCTTCAGCCAGGGCCCCTCCGCCATGCGTCCCTTGATTCTCAAGGATATCGCCGGAGAGCTGGGGC
TGCACGAGTCCACGATATCCCGGGCCACGACCCAGAAGTACATGCTTACTCCGTTCGGCACGATGGAGCTGAAGGACTTC
TTCGGCGCCGGTGTGGCCACCGATAGCGGCGACGCCGCGTCCGCGACGGCCGTGCAGGCCCACATCAAGCGCCTGGTGGC
GGAAGAAAACCGCGCCAAGCCGCTGTCGGACAACCAGCTTATGCAAAAGCTGGCCGAGCAGGGCATCGTGATCGCCCGCC
GCACCGTGGCCAAATACCGGGAATCGATGCGCATCGCCCCGGCCTCGGTGCGCAAGGCGCAGGCGGCGCTGCGTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-472)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(105-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193FBX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.835

100

0.508

Multiple sequence alignment