Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J46_RS00500 Genome accession   NZ_CP020419
Coordinates   87088..87594 (-) Length   168 a.a.
NCBI ID   WP_003687075.1    Uniprot ID   Q5F534
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 82088..92594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS13015 - 82792..82902 (+) 111 Protein_87 IS5/IS1182 family transposase -
  A6J46_RS00485 (A6J46_00510) - 82894..83589 (-) 696 WP_003687079.1 Fic family protein -
  A6J46_RS00495 (A6J46_00520) polA 84151..86943 (-) 2793 WP_003687077.1 DNA polymerase I -
  A6J46_RS00500 (A6J46_00525) luxS 87088..87594 (-) 507 WP_003687075.1 S-ribosylhomocysteine lyase Regulator
  A6J46_RS00505 (A6J46_00530) - 87616..88035 (-) 420 WP_082298622.1 DUF2251 domain-containing protein -
  A6J46_RS00510 (A6J46_00535) cyaY 88068..88391 (-) 324 WP_002226758.1 iron donor protein CyaY -
  A6J46_RS00515 (A6J46_00540) - 88462..88632 (+) 171 WP_003687071.1 LPS translocon maturation chaperone LptM -
  A6J46_RS00520 (A6J46_00545) lysA 88643..89863 (+) 1221 WP_003687069.1 diaminopimelate decarboxylase -
  A6J46_RS00525 (A6J46_00550) - 90057..90479 (+) 423 WP_003687065.1 toxin-antitoxin system YwqK family antitoxin -
  A6J46_RS00530 (A6J46_00555) - 90531..90623 (-) 93 WP_010356218.1 methionine/alanine import family NSS transporter small subunit -
  A6J46_RS00535 (A6J46_00560) - 90620..92155 (-) 1536 WP_010359695.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18623.45 Da        Isoelectric Point: 5.9060

>NTDB_id=185936 A6J46_RS00500 WP_003687075.1 87088..87594(-) (luxS) [Neisseria gonorrhoeae strain FDAARGOS_207]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGAGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNRNGDLA
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=185936 A6J46_RS00500 WP_003687075.1 87088..87594(-) (luxS) [Neisseria gonorrhoeae strain FDAARGOS_207]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACTGTATTCGACCTGCGCTTTTGCATCCCCAATAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTTGCCGGCTTTATGCGCGACCACTTGAACGGCGCCGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTTGCCGATGCGTGGTTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGTAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCTGATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTTAACCGAAACGGCGATTTGGCT
TTGGATGAAAGCCTGCTGAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F534

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

78.443

99.405

0.78