Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   A6J43_RS02465 Genome accession   NZ_CP020415
Coordinates   405727..407916 (+) Length   729 a.a.
NCBI ID   WP_082277495.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400727..412916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS02445 (A6J43_02440) - 400910..401299 (-) 390 WP_082277493.1 type IV pilin protein -
  A6J43_RS02450 (A6J43_02445) - 401525..402703 (+) 1179 WP_082277494.1 MacA family efflux pump subunit -
  A6J43_RS02455 (A6J43_02450) - 402769..404703 (+) 1935 WP_003695602.1 MacB family efflux pump subunit -
  A6J43_RS02460 (A6J43_02455) - 404802..405587 (-) 786 WP_003689299.1 DsbC family protein -
  A6J43_RS02465 (A6J43_02460) priA 405727..407916 (+) 2190 WP_082277495.1 primosomal protein N' Machinery gene
  A6J43_RS02470 (A6J43_02465) - 407963..409058 (-) 1096 Protein_407 NnrS family protein -
  A6J43_RS02475 (A6J43_02470) - 409354..409968 (-) 615 WP_003703682.1 CadD family cadmium resistance transporter -
  A6J43_RS02480 (A6J43_02475) - 410160..410852 (-) 693 WP_003689290.1 ATP-binding cassette domain-containing protein -
  A6J43_RS02485 (A6J43_02480) - 410879..411649 (-) 771 Protein_410 ABC transporter permease -
  A6J43_RS13665 - 411728..411865 (-) 138 WP_153707873.1 hypothetical protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81160.03 Da        Isoelectric Point: 8.0826

>NTDB_id=185807 A6J43_RS02465 WP_082277495.1 405727..407916(+) (priA) [Neisseria gonorrhoeae strain FDAARGOS_204]
MIYHRIAVNVPLSDGLLTYSHSEPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDAARILSVQTVFVEEKPLSQSWRDLLA
FTSRYYHYPIGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQANAQA
AKLIEDWAEQGWIETTEAAKPVLRPYRGQASHSEFVLNTDQQKASDEIQTALGRFRSFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHASAQLPQVDILNIGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRALLPKAAVVRVDRDSTAHKNDWADLYRRIANDEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSRFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=185807 A6J43_RS02465 WP_082277495.1 405727..407916(+) (priA) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGATCTACCATCGCATCGCTGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCGCATTCCGAGCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACTGTTGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATGCGGCGCGGATTTTGAGCGTTCAGACGGTCTTTGTGGAAGAAAAGCCGCTGTCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGATTGGGCAGGCTGTATTTGCCGCATTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAACAGGCAAACGCGCAGGCG
GCGAAATTGATTGAGGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTTTTAAGGCCGTACCG
CGGGCAGGCTTCGCACTCTGAATTTGTATTAAATACCGACCAGCAGAAGGCTTCCGATGAAATTCAGACGGCATTGGGAC
GCTTCCGGTCGTTTCTGCTGTACGGCATTACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGACAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTAAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTTACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATGCTTCCGCGCAACTGCCACAAGTGGACATCCTCAACATAGGTCGTCTGAAACTCGAT
AACGGCTTCTCACCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCTGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTTCAAATGTCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGACACGGTACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTGCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCAGATTTGTACCGCCGCATCGCCAACGACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACACCCTGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCTTTCGGTTTTCAGACGGCCGTCCGT
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTCTTGCCCGAAAG
CGTCTCCCGGTTCGGTGCCGCCCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAGAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(208-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.806

100

0.373