Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J38_RS07785 Genome accession   NZ_CP020411
Coordinates   1579168..1579671 (-) Length   167 a.a.
NCBI ID   WP_005693682.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574168..1584671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS07760 (A6J38_07745) - 1574303..1575355 (+) 1053 WP_005666442.1 extracellular solute-binding protein -
  A6J38_RS07765 (A6J38_07750) hslU 1575425..1576759 (-) 1335 WP_010868991.1 HslU--HslV peptidase ATPase subunit -
  A6J38_RS07770 (A6J38_07755) hslV 1576770..1577297 (-) 528 WP_005649427.1 ATP-dependent protease subunit HslV -
  A6J38_RS07775 (A6J38_07760) aphA 1577516..1578223 (+) 708 WP_005649426.1 acid phosphatase AphA -
  A6J38_RS07780 (A6J38_09215) - 1578270..1579067 (-) 798 Protein_1482 IS3 family transposase -
  A6J38_RS07785 (A6J38_07780) luxS 1579168..1579671 (-) 504 WP_005693682.1 S-ribosylhomocysteine lyase Regulator
  A6J38_RS07790 (A6J38_07785) - 1580001..1580474 (-) 474 WP_005693683.1 YqaA family protein -
  A6J38_RS07795 (A6J38_07790) - 1580474..1581076 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  A6J38_RS07800 (A6J38_07795) - 1581192..1581569 (+) 378 WP_005693684.1 PRD domain-containing protein -
  A6J38_RS07805 (A6J38_07800) rsmG 1581709..1582320 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A6J38_RS07810 (A6J38_07805) - 1582446..1582820 (+) 375 WP_005659757.1 ATP synthase subunit I -
  A6J38_RS07815 (A6J38_07810) atpB 1582857..1583645 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  A6J38_RS07820 (A6J38_07815) atpE 1583701..1583955 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  A6J38_RS07825 (A6J38_07820) atpF 1584005..1584475 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18527.25 Da        Isoelectric Point: 5.2115

>NTDB_id=185773 A6J38_RS07785 WP_005693682.1 1579168..1579671(-) (luxS) [Haemophilus influenzae strain FDAARGOS_199]
MPLLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=185773 A6J38_RS07785 WP_005693682.1 1579168..1579671(-) (luxS) [Haemophilus influenzae strain FDAARGOS_199]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCTCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCATTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGAAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCTGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737