Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   A9I65_RS04250 Genome accession   NZ_CP016073
Coordinates   967271..968314 (+) Length   347 a.a.
NCBI ID   WP_014613481.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 081661 isolate 20081661     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 962271..973314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9I65_RS04225 (A9I65_04225) - 962525..963247 (+) 723 WP_014613476.1 glutamine amidotransferase -
  A9I65_RS04230 (A9I65_04230) - 964217..965215 (-) 999 WP_037542644.1 aromatic acid exporter family protein -
  A9I65_RS04235 (A9I65_04235) map 965312..966073 (+) 762 WP_014613478.1 type I methionyl aminopeptidase -
  A9I65_RS04240 (A9I65_04240) - 966171..966560 (+) 390 WP_014613479.1 hypothetical protein -
  A9I65_RS04245 (A9I65_04245) liaF 966573..967274 (+) 702 WP_014613480.1 cell wall-active antibiotics response protein LiaF -
  A9I65_RS04250 (A9I65_04250) vraS 967271..968314 (+) 1044 WP_014613481.1 sensor histidine kinase Regulator
  A9I65_RS04255 (A9I65_04255) vraR 968304..968933 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  A9I65_RS04260 (A9I65_04260) - 969500..970081 (-) 582 WP_015729388.1 carbonic anhydrase -
  A9I65_RS04265 (A9I65_04265) - 970114..971451 (-) 1338 WP_037542645.1 YihY/virulence factor BrkB family protein -
  A9I65_RS04270 (A9I65_04270) - 971667..971954 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  A9I65_RS04275 (A9I65_04275) - 971962..972420 (-) 459 WP_014613486.1 low molecular weight protein-tyrosine-phosphatase -
  A9I65_RS04280 (A9I65_04280) - 972554..972757 (+) 204 WP_037542646.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39939.24 Da        Isoelectric Point: 5.0435

>NTDB_id=185658 A9I65_RS04250 WP_014613481.1 967271..968314(+) (vraS) [Staphylococcus pseudintermedius strain 081661 isolate 20081661]
MNHYVRAIGSMLILVYSMLTAFFFIDKVFTNIIFFQGMFYTQILGIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWLKQ
QIVRAFEGETVGINDQQLELYNETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKSLVTDLQRKVPIKVVQEI
DEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVELLNRNDYLLLRIQDDGIGFNVDEKLEQSYGLKNMRERAIEIGAT
FHIVSLPDAGTRIEVKAPLEKEEQHDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=185658 A9I65_RS04250 WP_014613481.1 967271..968314(+) (vraS) [Staphylococcus pseudintermedius strain 081661 isolate 20081661]
ATGAATCACTACGTCCGAGCGATAGGTTCGATGCTCATTCTCGTATATAGTATGCTCACCGCGTTTTTCTTTATTGACAA
AGTGTTCACCAATATTATTTTCTTTCAAGGCATGTTTTATACACAAATTTTAGGTATTCCTGTTTTTATCTTTTTAAATT
TAGTCGTCATTTTTTTATGTATTATTGTGGGCAGTGTGTTAGCTTATAAAATCAATCAACAAAATGATTGGCTCAAGCAA
CAAATCGTTCGTGCCTTTGAAGGTGAAACAGTGGGCATCAATGATCAACAACTCGAGCTGTATAATGAAACGATTGAATT
ATATCAAGCACTCGTCCCATTAAATCAAGAATTGCATAAAATGCGAATTAAAACACAAAATTTAACGAATGAAACGTATA
ATTTAAATGATTTGAAGGTGAAAAAGATTATAGAAGATGAACGACAGCGTTTAGCACGAGAATTGCATGATAGTGTGTCG
CAACAACTTTTCGCGGCAAGTATGATGTTGTCTGCAATCAAAGAAACAGATTTAGCACCACCGTTAGACCAACAAATTCC
AACGTTAGAAAAAATGGTGCAAGACTCACAACTTGAAATGCGCGCTCTGTTACTTCACTTGAGACCTATAGGATTGAAGG
ACAAATCGTTAGGTGAGGGAATTAAATCGCTTGTGACGGATCTACAACGTAAAGTACCCATTAAAGTCGTGCAAGAAATT
GATGAGTTTGAAGTACCTAAAGGCATTGAGGATCACCTTTTTAGAATTACCCAAGAAGCGATTTCCAATACGTTACGACA
TGCTGAGGGGACGCAAGTAACGGTAGAATTACTTAACCGCAATGATTATTTATTGTTGCGTATACAAGATGACGGCATTG
GATTTAATGTCGATGAAAAGTTAGAACAAAGTTATGGATTAAAAAATATGCGTGAACGTGCAATAGAGATTGGTGCCACA
TTTCATATCGTCTCATTACCTGATGCGGGGACGAGAATAGAAGTGAAAGCACCACTTGAAAAGGAGGAACAGCATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

83.862

100

0.839


Multiple sequence alignment