Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   A6J54_RS12955 Genome accession   NZ_CP020402
Coordinates   2182988..2185177 (-) Length   729 a.a.
NCBI ID   WP_080542351.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177988..2190177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS12945 (A6J54_12560) - 2180865..2181821 (+) 957 Protein_2120 IS110 family transposase -
  A6J54_RS12950 (A6J54_12565) - 2181869..2182942 (+) 1074 WP_080542350.1 NnrS family protein -
  A6J54_RS12955 (A6J54_12570) priA 2182988..2185177 (-) 2190 WP_080542351.1 primosomal protein N' Machinery gene
  A6J54_RS12960 (A6J54_12575) - 2185316..2186098 (+) 783 WP_002214390.1 DsbC family protein -
  A6J54_RS12965 (A6J54_12585) - 2186511..2188445 (-) 1935 WP_080542352.1 MacB family efflux pump subunit -
  A6J54_RS12970 (A6J54_12590) - 2188511..2189689 (-) 1179 WP_002230317.1 MacA family efflux pump subunit -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81029.68 Da        Isoelectric Point: 7.3903

>NTDB_id=185643 A6J54_RS12955 WP_080542351.1 2182988..2185177(-) (priA) [Neisseria meningitidis strain FDAARGOS_215]
MIYHRIAVNVPLSDGLLTYSHSDPLPQGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSVRTAFSDEPLLPESWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
AKLIEDWAVQGWIETTEAAKPVLRSCNGQASHSEFVLNADQRQASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLSAMSGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NSFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYVVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAVEFLNAAKETLVPLLPESVSQFGAAPMLMVRLAERERAQIFLESPSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=185643 A6J54_RS12955 WP_080542351.1 2182988..2185177(-) (priA) [Neisseria meningitidis strain FDAARGOS_215]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTGCCGCA
GGGCACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGAGCGTTCGGACGGCCTTTTCGGACGAGCCGCTGCTGCCCGAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACCGGGCAGGCAGTATTTGCCGCATTGCCGCAAGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCCTTGTTTTACGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAGCAGGTAAACGCGCAGGCG
GCGAAATTGATTGAAGATTGGGCGGTGCAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCGACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTTGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTACCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGAGCGCGATGTCGG
GGCAGGCGAAGCTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTATCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTTGAC
AACAGCTTCTCGCCGCAAGCCTTGCAACTTTTGAAGCAGAACTTTGAAGCGGGCGGTATGTCGTTGGTGTACCTCAACCG
TCGCGGCTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGTCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGT
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACGAAATCG
ATATTCTGGTCGGCACGCAGATGCTCGCCAAAGGTCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAGCCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGTCGTGTTTGCCGAAAACGAATTGAATGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGACGCGCCGCGCGTTGCCGATGCGGTGGAGTTTCTCAACGCCGCCAAAGAAACCCTGGTCCCGCTGTTGCCCGAAAG
CGTTTCACAGTTCGGCGCCGCCCCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCCC
CGTCCCGACAGGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACAGGGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.107

100

0.369