Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   A6J53_RS07645 Genome accession   NZ_CP020401
Coordinates   1294971..1297160 (+) Length   729 a.a.
NCBI ID   WP_002256442.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289971..1302160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS07630 (A6J53_07450) - 1290456..1291634 (+) 1179 WP_002256440.1 MacA family efflux pump subunit -
  A6J53_RS07635 (A6J53_07455) - 1291700..1293634 (+) 1935 WP_002256441.1 MacB family efflux pump subunit -
  A6J53_RS07640 (A6J53_07465) - 1294050..1294832 (-) 783 WP_002226623.1 DsbC family protein -
  A6J53_RS07645 (A6J53_07470) priA 1294971..1297160 (+) 2190 WP_002256442.1 primosomal protein N' Machinery gene
  A6J53_RS07650 (A6J53_07475) - 1297206..1298279 (-) 1074 WP_002256443.1 NnrS family protein -
  A6J53_RS07655 (A6J53_07480) - 1298327..1299283 (-) 957 WP_082301647.1 IS110 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81176.04 Da        Isoelectric Point: 7.7361

>NTDB_id=185541 A6J53_RS07645 WP_002256442.1 1294971..1297160(+) (priA) [Neisseria meningitidis strain FDAARGOS_214]
MIYHRIAVNVPLSDGLLTYSYSEPLPPGTRVLVPFRNKTVVGIVWETDISPDMDTARILSVQTAFSDEPPLPQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
AKLIEDWAEQGWIEMTEAAKPVLRPYHGQASHSEFVLNADQRQASDAIQTALGRFRPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVKNRFADVPTAVLHSQMAAGKRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGYTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESVSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPHEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=185541 A6J53_RS07645 WP_002256442.1 1294971..1297160(+) (priA) [Neisseria meningitidis strain FDAARGOS_214]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACGTATTCCTATTCCGAGCCGCTTCCTCC
GGGAACTCGGGTGCTTGTGCCTTTTCGCAATAAAACCGTTGTCGGGATTGTGTGGGAAACGGATATTTCGCCCGATATGG
ATACGGCGCGGATTTTGAGCGTTCAGACGGCCTTTTCGGACGAACCGCCGTTGCCTCAAAGCTGGCGTGATTTGTTGGCA
TTTACGTCGCGTTATTACCACTATCCGACTGGGCAGGCGGTGTTTGCCGCTCTGCCACAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAGCAGGTAAACGCGCAGGCG
GCGAAATTGATCGAAGATTGGGCGGAGCAGGGTTGGATTGAAATGACAGAAGCAGCAAAGCCTGTATTGAGGCCGTACCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCGACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCGGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTTTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGAAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAAGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGCCCGATCATATTGGGCAGTGCCACCCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATCCTCAACGTAGGCCGTCTGAAACTTGAC
AACGGCTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCAGGTGGCATGTCGTTGGTGTACCTCAACCG
TCGCGGCTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGTTATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTAC
TGCACCAACGCGCCCGCCAACTGCGCTGTCACCACTGCGACCACCGCGAACCCATTCCGTTCAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCCGCCGT
CGTCCGTGTTGACAGGGACAGCACGGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATTGCCGACAACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTCGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTCCGCGCACCGGAAAGGTTGTTTGCCGAGTTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGATT
ATGCCGTGTTTGCCGAAAATGAATTGAACGAGCGGCAAATGTTCGCGATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTTGGCGCCGCCCCTATGCTGATGGTGCGCCTTGCTGAACGCGAACGCGCGCAAATCTTCCTCGAATCGG
TATCCCGACAGGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCATGAGGCTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(206-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.24

100

0.365

Multiple sequence alignment