Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J53_RS05385 Genome accession   NZ_CP020401
Coordinates   881240..881746 (-) Length   168 a.a.
NCBI ID   WP_002245236.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 876240..886746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS05370 (A6J53_05250) - 876281..876952 (-) 672 WP_002225856.1 Fic family protein -
  A6J53_RS05380 (A6J53_05260) polA 878299..881094 (-) 2796 WP_002256968.1 DNA polymerase I -
  A6J53_RS05385 (A6J53_05265) luxS 881240..881746 (-) 507 WP_002245236.1 S-ribosylhomocysteine lyase Regulator
  A6J53_RS05390 (A6J53_05270) - 881768..882187 (-) 420 WP_002243080.1 DUF2251 domain-containing protein -
  A6J53_RS05395 (A6J53_05275) - 882213..883229 (-) 1017 WP_002256967.1 YeiH family protein -
  A6J53_RS05400 (A6J53_05280) cyaY 883256..883579 (-) 324 WP_002218099.1 iron donor protein CyaY -
  A6J53_RS05405 (A6J53_05285) lptM 883650..883820 (+) 171 WP_002226757.1 LPS translocon maturation chaperone LptM -
  A6J53_RS05410 (A6J53_05290) lysA 883831..885051 (+) 1221 WP_002256966.1 diaminopimelate decarboxylase -
  A6J53_RS05415 (A6J53_05295) - 885111..885203 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6J53_RS05420 (A6J53_05300) - 885200..886735 (-) 1536 WP_002221654.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18639.36 Da        Isoelectric Point: 5.5451

>NTDB_id=185531 A6J53_RS05385 WP_002245236.1 881240..881746(-) (luxS) [Neisseria meningitidis strain FDAARGOS_214]
MPLLDSFKVDHTRMHAPAVRVAKTMATPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=185531 A6J53_RS05385 WP_002245236.1 881240..881746(-) (luxS) [Neisseria meningitidis strain FDAARGOS_214]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGGCCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762

Multiple sequence alignment