Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   A9P85_RS10140 Genome accession   NZ_CP016029
Coordinates   2275499..2275813 (-) Length   104 a.a.
NCBI ID   WP_027220533.1    Uniprot ID   -
Organism   Legionella pneumophila strain Pontiac     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270499..2280813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P85_RS10115 (A9P85_10115) - 2270924..2271424 (-) 501 WP_027220529.1 hypothetical protein -
  A9P85_RS10120 (A9P85_10120) - 2271916..2272776 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  A9P85_RS10125 (A9P85_10125) - 2272894..2274090 (-) 1197 WP_011214245.1 murein transglycosylase A -
  A9P85_RS10130 (A9P85_10130) lpp1976 2274200..2274757 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  A9P85_RS10135 (A9P85_10135) lpp1977 2274754..2275560 (-) 807 WP_050598614.1 PilW family protein Machinery gene
  A9P85_RS10140 (A9P85_10140) lpp1978 2275499..2275813 (-) 315 WP_027220533.1 type IV pilus modification PilV family protein Machinery gene
  A9P85_RS10145 (A9P85_10145) hisC 2275973..2277082 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  A9P85_RS10150 (A9P85_10150) - 2277119..2277460 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  A9P85_RS10160 (A9P85_10160) secF 2277638..2278555 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  A9P85_RS10165 (A9P85_10165) secD 2278568..2280424 (-) 1857 WP_027220537.1 protein translocase subunit SecD -
  A9P85_RS10170 (A9P85_10170) yajC 2280446..2280781 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12249.39 Da        Isoelectric Point: 10.0591

>NTDB_id=185498 A9P85_RS10140 WP_027220533.1 2275499..2275813(-) (lpp1978) [Legionella pneumophila strain Pontiac]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=185498 A9P85_RS10140 WP_027220533.1 2275499..2275813(-) (lpp1978) [Legionella pneumophila strain Pontiac]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

100

100

1
  lpp1978 Legionella pneumophila str. Paris

98.077

100

0.981

Multiple sequence alignment