Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A9P85_RS04260 Genome accession   NZ_CP016029
Coordinates   965151..965468 (+) Length   105 a.a.
NCBI ID   WP_014841214.1    Uniprot ID   -
Organism   Legionella pneumophila strain Pontiac     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960151..970468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P85_RS04240 (A9P85_04240) - 960303..961742 (+) 1440 WP_014841211.1 cation:proton antiporter -
  A9P85_RS04245 (A9P85_04245) nadC 961739..962581 (+) 843 WP_014841212.1 carboxylating nicotinate-nucleotide diphosphorylase -
  A9P85_RS04250 (A9P85_04250) - 962578..963669 (+) 1092 WP_010946544.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  A9P85_RS04255 (A9P85_04255) - 963644..965059 (+) 1416 WP_014841213.1 M20 family metallopeptidase -
  A9P85_RS04260 (A9P85_04260) comEA 965151..965468 (+) 318 WP_014841214.1 ComEA family DNA-binding protein Machinery gene
  A9P85_RS04265 (A9P85_04265) - 965664..966701 (+) 1038 WP_011213320.1 rod shape-determining protein -
  A9P85_RS04270 (A9P85_04270) mreC 966679..967587 (+) 909 WP_010946548.1 rod shape-determining protein MreC -
  A9P85_RS04275 (A9P85_04275) mreD 967584..968063 (+) 480 WP_010946549.1 rod shape-determining protein MreD -
  A9P85_RS04280 (A9P85_04280) - 967999..968601 (-) 603 WP_014841215.1 pseudouridine synthase -
  A9P85_RS04285 (A9P85_04285) - 968862..969560 (+) 699 WP_010946551.1 hypothetical protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11773.78 Da        Isoelectric Point: 10.5233

>NTDB_id=185475 A9P85_RS04260 WP_014841214.1 965151..965468(+) (comEA) [Legionella pneumophila strain Pontiac]
MKARLIAILLSFIVIPFSSQAENEPQKTPAKQILVKGKINLNTADVYSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEVFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=185475 A9P85_RS04260 WP_014841214.1 965151..965468(+) (comEA) [Legionella pneumophila strain Pontiac]
ATGAAAGCAAGACTCATTGCTATTTTGTTGTCATTTATCGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAATCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTGTATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGGGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
GCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAGTTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

98.095

100

0.981
  comEA Legionella pneumophila strain ERS1305867

98.095

100

0.981

Multiple sequence alignment