Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FBA2_RS01635 Genome accession   NZ_CP016028
Coordinates   337642..339450 (-) Length   602 a.a.
NCBI ID   WP_064776883.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain FBA2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 332642..344450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBA2_RS01610 (FBA2_01610) - 332724..334265 (+) 1542 WP_064776880.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  FBA2_RS01615 (FBA2_01615) - 334371..334952 (+) 582 WP_064776881.1 hypothetical protein -
  FBA2_RS01620 (FBA2_01620) - 335226..336113 (+) 888 WP_064776882.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  FBA2_RS01625 (FBA2_01625) - 336110..336790 (+) 681 WP_004265149.1 metal ABC transporter ATP-binding protein -
  FBA2_RS01630 (FBA2_01630) - 336825..337601 (+) 777 WP_064777560.1 metal ABC transporter permease -
  FBA2_RS01635 (FBA2_01635) pepF 337642..339450 (-) 1809 WP_064776883.1 oligoendopeptidase F Regulator
  FBA2_RS01640 (FBA2_01640) - 339647..340855 (+) 1209 WP_081272975.1 LCP family protein -
  FBA2_RS01645 (FBA2_01645) - 341034..342272 (+) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67401.52 Da        Isoelectric Point: 4.6609

>NTDB_id=185442 FBA2_RS01635 WP_064776883.1 337642..339450(-) (pepF) [Latilactobacillus curvatus strain FBA2]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIKQILATFRQLEIIYVYASM
KNDQDTANATYQGYQAQVDALAAEVSAAAAFLEPAILAIPAGQLADWLTKMPNLAVYSHFIQTINDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTFQLSDGVYSQLLQSANRSVRQAAFEALYKTYSQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKIQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFATATTLANGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=185442 FBA2_RS01635 WP_064776883.1 337642..339450(-) (pepF) [Latilactobacillus curvatus strain FBA2]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCAAACAAATCTTAGCCACTTTCCGCCAACTCGAAATAATTTACGTTTATGCTAGCATG
AAAAATGATCAAGATACCGCCAATGCAACTTATCAAGGCTATCAAGCTCAAGTTGACGCACTGGCTGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCAGCTGGGCAATTAGCAGATTGGCTTACCAAGATGCCTAATT
TAGCAGTTTACAGCCATTTCATTCAAACCATTAACGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGTGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTTCAGCTTTCAGACGGGGTCTACAGCCAACTTTTGCAATCAGCCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATAGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTTTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAACCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGATCCAGGCCTATCTACTAAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCTGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTACTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.822

98.173

0.538

Multiple sequence alignment