Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   A9497_RS08265 Genome accession   NZ_CP016026
Coordinates   1565927..1566370 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS SM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560927..1571370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9497_RS08245 (A9497_08245) - 1561451..1562203 (-) 753 WP_024704202.1 NUDIX domain-containing protein -
  A9497_RS08250 (A9497_08250) - 1562267..1563373 (-) 1107 WP_024009756.1 AAA family ATPase -
  A9497_RS08255 (A9497_08255) gdhA 1563717..1565069 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  A9497_RS08260 (A9497_08260) - 1565327..1565737 (+) 411 WP_011680804.1 peptide deformylase -
  A9497_RS08265 (A9497_08265) rcrR 1565927..1566370 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  A9497_RS08270 (A9497_08270) rcrP 1566374..1568188 (+) 1815 WP_064784291.1 ABC transporter ATP-binding protein Regulator
  A9497_RS08275 (A9497_08275) rcrQ 1568178..1569956 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  A9497_RS08280 (A9497_08280) - 1570112..1570369 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=185404 A9497_RS08265 WP_002945408.1 1565927..1566370(+) (rcrR) [Streptococcus thermophilus strain KLDS SM]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=185404 A9497_RS08265 WP_002945408.1 1565927..1566370(+) (rcrR) [Streptococcus thermophilus strain KLDS SM]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment