Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSK2_RS13030 Genome accession   NZ_CP020367
Coordinates   2541584..2542714 (-) Length   376 a.a.
NCBI ID   WP_032726212.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2536584..2547714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS13000 (BSK2_13000) - 2536876..2537394 (-) 519 WP_080529571.1 GNAT family N-acetyltransferase -
  BSK2_RS13005 (BSK2_13005) - 2537413..2537868 (-) 456 WP_080529572.1 MarR family transcriptional regulator -
  BSK2_RS13010 (BSK2_13010) - 2537983..2538630 (+) 648 WP_080529573.1 YitT family protein -
  BSK2_RS13015 (BSK2_13015) - 2538737..2539537 (-) 801 WP_080529574.1 dihydrodipicolinate synthase family protein -
  BSK2_RS13020 (BSK2_13020) - 2539687..2541066 (+) 1380 WP_080529575.1 PLP-dependent aminotransferase family protein -
  BSK2_RS13030 (BSK2_13030) rapC 2541584..2542714 (-) 1131 WP_032726212.1 hypothetical protein Regulator
  BSK2_RS13035 (BSK2_13035) - 2542900..2544780 (+) 1881 WP_080529576.1 T7SS effector LXG polymorphic toxin -
  BSK2_RS13040 (BSK2_13040) - 2544785..2545084 (+) 300 WP_080529577.1 contact-dependent growth inhibition system immunity protein -
  BSK2_RS13045 (BSK2_13045) cwlA 2545123..2545941 (-) 819 WP_080529578.1 N-acetylmuramoyl-L-alanine amidase -
  BSK2_RS13050 (BSK2_13050) - 2545986..2546126 (-) 141 Protein_2528 phage holin family protein -
  BSK2_RS13055 (BSK2_13055) - 2546153..2546338 (-) 186 Protein_2529 phage terminase large subunit -
  BSK2_RS13060 (BSK2_13060) terS 2546335..2547126 (-) 792 WP_080529579.1 phage terminase small subunit -
  BSK2_RS13065 (BSK2_13065) - 2547309..2547395 (+) 87 WP_073991391.1 YjcZ family sporulation protein -
  BSK2_RS13070 (BSK2_13070) - 2547436..2547528 (+) 93 WP_080019512.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44226.69 Da        Isoelectric Point: 6.9769

>NTDB_id=185380 BSK2_RS13030 WP_032726212.1 2541584..2542714(-) (rapC) [Bacillus subtilis strain GQJK2]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIEASNKGITGLLSYYSLFFRGMYEFDKREYVKAIGFYREAEKHLTHVNDDIEKAEFHFKLAEAYYIMKQNHISMHH
VKQAMDIYNQYELYKVRKIQCHFVISGNYVDFKHFEKSLPHLEKALELSKQLERNERLLSSAYYNLGKNYADLGINDKAD
HFLNKAAKVSEDAKLSNLPHSLFTYAKFLFKQGKTSEAIKMSKKGLSAAISQGDKLFVSLQKYLEALYINAVDQAGIKKT
IDYLERNKNYAYVEDIAIDTAEVFAKSKEFETSYVYHQKMLETQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=185380 BSK2_RS13030 WP_032726212.1 2541584..2542714(-) (rapC) [Bacillus subtilis strain GQJK2]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTTCC
GGATGCAGAGATTTTAAAGGCAGAGGTGGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCAGTTACAACAAGAATCAGACCAACTATTGATGAA
CTGCTTGAAAAAATAGAAGCATCCAATAAGGGGATAACCGGTCTGTTGTCTTACTACTCTCTGTTTTTTCGTGGAATGTA
TGAGTTTGATAAGAGGGAATATGTCAAAGCAATTGGTTTTTATCGAGAAGCAGAAAAACACCTTACTCATGTTAATGATG
ATATTGAGAAGGCGGAATTTCATTTTAAGTTGGCTGAAGCTTACTATATTATGAAGCAAAATCATATCTCGATGCACCAT
GTTAAACAAGCGATGGACATTTATAATCAATATGAACTTTATAAAGTGCGAAAAATACAATGTCATTTCGTGATATCTGG
AAATTACGTTGATTTTAAACATTTCGAGAAAAGCTTGCCGCACCTTGAAAAAGCCTTAGAGTTGTCCAAACAATTAGAGC
GCAATGAAAGGCTGCTTAGCTCGGCTTACTACAATCTCGGAAAGAATTACGCAGATTTAGGAATAAATGATAAAGCAGAT
CATTTCTTAAATAAGGCTGCCAAGGTATCAGAAGATGCTAAGTTGAGCAATTTACCACATTCCCTGTTTACATACGCTAA
ATTTCTTTTTAAGCAAGGGAAAACAAGTGAAGCAATAAAAATGAGTAAAAAGGGTTTATCCGCTGCAATATCCCAAGGTG
ATAAACTTTTTGTGTCCCTGCAAAAGTATTTGGAAGCACTTTATATTAATGCAGTAGATCAAGCGGGAATCAAAAAAACG
ATTGATTACTTAGAAAGAAATAAGAATTATGCGTATGTGGAAGATATCGCAATTGATACGGCTGAAGTTTTTGCAAAATC
AAAGGAATTTGAAACATCATATGTTTATCATCAAAAAATGCTTGAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(221-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

100

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.316

100

0.418