Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A9C19_RS20315 Genome accession   NZ_CP016020
Coordinates   4189221..4190384 (-) Length   387 a.a.
NCBI ID   WP_420835803.1    Uniprot ID   -
Organism   Bacillus weihaiensis strain Alg07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4184221..4195384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS20305 (A9C19_19940) gyrB 4186915..4188837 (-) 1923 WP_072581966.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  A9C19_RS20310 (A9C19_19945) remB 4188971..4189219 (-) 249 WP_072581561.1 extracellular matrix regulator RemB -
  A9C19_RS20315 (A9C19_19950) recF 4189221..4190384 (-) 1164 WP_420835803.1 DNA replication/repair protein RecF Machinery gene
  A9C19_RS20320 (A9C19_19955) yaaA 4190565..4190780 (-) 216 WP_072581562.1 S4 domain-containing protein YaaA -
  A9C19_RS20325 (A9C19_19960) dnaN 4191108..4192244 (-) 1137 WP_072581563.1 DNA polymerase III subunit beta -
  A9C19_RS20330 (A9C19_19965) dnaA 4192468..4193820 (-) 1353 WP_072581564.1 chromosomal replication initiator protein DnaA -
  A9C19_RS20335 (A9C19_19970) rpmH 4194833..4194967 (+) 135 WP_026561635.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 44305.56 Da        Isoelectric Point: 7.6857

>NTDB_id=185332 A9C19_RS20315 WP_420835803.1 4189221..4190384(-) (recF) [Bacillus weihaiensis strain Alg07]
MKTAKTKVGVQNLFIKELTLKNYRNYEDLTVQFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKELIYWDKEYA
KIEGSVEKYNRSTSLQLVISKKGKKAKLNHIEQERLSQYVGGMNVIMFAPEDLSLVKGSPQIRRRFIDMEIGQVSAVYLH
DLSRYQKIMQQRNHYLKLLQTRKQTDQTMLDVLTAQLSEAAGKIILKRLQFISELQKWAQPIHTGISRGLETLTIKYKPS
LDVSEDDDLSKMIRAFEEKFAKIREKEIDRGATLAGPHRDDLLFFVNNHDVQTYGSQGQQRTTALSLKLAEIDLIHNEIG
EYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVTTTSVEGIDHQTLREAATFHVKAGELSDDNRGD

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=185332 A9C19_RS20315 WP_420835803.1 4189221..4190384(-) (recF) [Bacillus weihaiensis strain Alg07]
ATGAAAACAGCCAAAACTAAAGTTGGTGTGCAAAATTTGTTTATTAAAGAGCTGACATTAAAAAATTATCGTAATTATGA
AGATCTAACGGTTCAGTTTGAAAATAAAGTAAATGTGATACTCGGAGAGAATGCTCAAGGAAAAACCAATGTGATGGAAT
CAATCTATGTTTTAGCCATGGCGAAATCACATCGAACGTCAAACGATAAAGAACTTATCTATTGGGATAAAGAATATGCT
AAAATAGAGGGTAGTGTTGAAAAATACAATCGTTCAACTTCTCTGCAATTGGTTATCTCAAAAAAAGGTAAAAAAGCGAA
ATTGAACCATATTGAGCAAGAGAGGCTAAGCCAGTATGTTGGTGGAATGAATGTTATTATGTTTGCTCCCGAGGATCTAA
GCTTAGTTAAGGGTAGTCCACAAATACGAAGGAGATTTATTGACATGGAGATTGGTCAGGTTTCAGCGGTGTATCTCCAT
GATTTGAGCCGTTATCAAAAAATTATGCAGCAGAGAAATCATTACTTAAAGCTTTTGCAAACTCGTAAGCAAACGGACCA
AACGATGCTTGATGTGCTTACAGCTCAGTTAAGTGAAGCTGCAGGCAAAATTATTTTGAAACGACTACAGTTCATTTCCG
AATTACAAAAGTGGGCTCAACCTATACATACTGGGATTAGTAGAGGGCTAGAAACATTAACCATAAAATATAAACCATCG
CTTGATGTATCAGAAGATGATGATTTGTCGAAAATGATAAGAGCCTTTGAGGAGAAGTTTGCTAAAATAAGAGAAAAGGA
AATTGATCGAGGTGCCACGTTAGCGGGACCACATCGTGATGACTTACTCTTTTTTGTAAACAACCACGATGTTCAAACAT
ACGGATCACAAGGACAGCAAAGAACGACTGCTTTGTCGTTAAAATTAGCTGAAATTGATTTAATACATAATGAGATTGGT
GAATATCCTATTCTTTTACTAGATGATGTACTTTCTGAACTAGACGATTATAGGCAATCTCATTTATTGAATACGATTCA
AGGAAAAGTTCAAACCTTTGTAACTACAACAAGTGTTGAAGGTATTGATCATCAAACATTAAGAGAAGCGGCGACATTTC
ATGTAAAAGCTGGGGAGCTTTCAGACGATAATAGAGGTGATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

75.272

95.09

0.716

Multiple sequence alignment