Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSK2_RS06725 Genome accession   NZ_CP020367
Coordinates   1296080..1297216 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291080..1302216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS06705 (BSK2_06705) uxaA 1291529..1293022 (+) 1494 WP_080529218.1 altronate dehydratase family protein -
  BSK2_RS06710 (BSK2_06710) yjnA 1293061..1293825 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  BSK2_RS06715 (BSK2_06715) bstD 1294050..1294514 (-) 465 WP_014479541.1 DinB family protein -
  BSK2_RS06720 (BSK2_06720) yjoB 1294663..1295934 (+) 1272 WP_076457808.1 ATPase YjoB -
  BSK2_RS06725 (BSK2_06725) rapC 1296080..1297216 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  BSK2_RS06730 (BSK2_06730) phrA 1297206..1297340 (+) 135 WP_080529219.1 phosphatase RapA inhibitor PhrA -
  BSK2_RS06735 (BSK2_06735) yjpA 1297370..1297627 (-) 258 WP_080529220.1 YciI family protein -
  BSK2_RS06740 (BSK2_06740) xlyB 1297748..1298701 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  BSK2_RS06745 (BSK2_06745) yjqA 1298741..1299118 (-) 378 WP_014479546.1 PH domain-containing protein -
  BSK2_RS06750 (BSK2_06750) pghB 1299224..1299826 (+) 603 WP_080529221.1 poly-gamma-glutamate hydrolase family protein -
  BSK2_RS06755 (BSK2_06755) xpdC 1299903..1300739 (+) 837 WP_003245071.1 manganese catalase family protein -
  BSK2_RS06760 (BSK2_06760) xkdA 1300783..1301379 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  BSK2_RS06765 (BSK2_06765) xre 1301542..1301883 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=185331 BSK2_RS06725 WP_015252291.1 1296080..1297216(+) (rapC) [Bacillus subtilis strain GQJK2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=185331 BSK2_RS06725 WP_015252291.1 1296080..1297216(+) (rapC) [Bacillus subtilis strain GQJK2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418