Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BSK2_RS06195 Genome accession   NZ_CP020367
Coordinates   1206221..1208050 (+) Length   609 a.a.
NCBI ID   WP_175407062.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201221..1213050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS06170 (BSK2_06170) yjbC 1201893..1202471 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BSK2_RS06175 (BSK2_06175) spx 1202652..1203047 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  BSK2_RS06180 (BSK2_06180) yjbE 1203090..1203746 (-) 657 WP_003232944.1 TerC family protein -
  BSK2_RS21000 - 1203916..1204056 (+) 141 WP_119122854.1 hypothetical protein -
  BSK2_RS06185 (BSK2_06185) mecA 1204023..1204679 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  BSK2_RS21005 - 1204674..1204796 (-) 123 WP_021479547.1 hypothetical protein -
  BSK2_RS06190 (BSK2_06190) coiA 1204870..1205991 (+) 1122 WP_250622050.1 competence protein CoiA Machinery gene
  BSK2_RS06195 (BSK2_06195) pepF 1206221..1208050 (+) 1830 WP_175407062.1 oligoendopeptidase F Regulator
  BSK2_RS06200 (BSK2_06200) - 1208087..1208254 (-) 168 WP_003244944.1 hypothetical protein -
  BSK2_RS06210 (BSK2_06210) spxH 1208568..1209467 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  BSK2_RS06215 (BSK2_06215) bhbI 1209464..1209862 (-) 399 WP_080529181.1 thiol management oxidoreductase -
  BSK2_RS06220 (BSK2_06220) cwlQ 1210117..1210851 (-) 735 WP_250622047.1 bifunctional muramidase/murein lytic transglycosylase -
  BSK2_RS06225 (BSK2_06225) yjbK 1210866..1211438 (-) 573 WP_014479452.1 CYTH domain-containing protein -
  BSK2_RS06230 (BSK2_06230) - 1211563..1211931 (+) 369 WP_046380937.1 hypothetical protein -
  BSK2_RS06235 (BSK2_06235) yjbM 1211960..1212595 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70097.90 Da        Isoelectric Point: 5.1562

>NTDB_id=185330 BSK2_RS06195 WP_175407062.1 1206221..1208050(+) (pepF) [Bacillus subtilis strain GQJK2]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVRELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAASKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=185330 BSK2_RS06195 WP_175407062.1 1206221..1208050(+) (pepF) [Bacillus subtilis strain GQJK2]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAGAGAATTAATTCCAAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGCG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCGGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGTTCACAATACCCGATTGATGTCTTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGAGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476

Multiple sequence alignment