Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A9C19_RS20090 Genome accession   NZ_CP016020
Coordinates   4145627..4145908 (+) Length   93 a.a.
NCBI ID   WP_072581532.1    Uniprot ID   A0A1L3MWM0
Organism   Bacillus weihaiensis strain Alg07     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4140627..4150908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS20080 (A9C19_19715) - 4141746..4142516 (-) 771 WP_072581530.1 TatD family hydrolase -
  A9C19_RS20085 (A9C19_19720) metG 4142748..4144739 (-) 1992 WP_072581531.1 methionine--tRNA ligase -
  A9C19_RS20090 (A9C19_19725) abrB 4145627..4145908 (+) 282 WP_072581532.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  A9C19_RS20095 (A9C19_19730) rsmI 4145991..4146869 (-) 879 WP_072581533.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  A9C19_RS20100 (A9C19_19735) - 4146863..4147159 (-) 297 WP_072581534.1 GIY-YIG nuclease family protein -
  A9C19_RS20105 (A9C19_19740) - 4147137..4147889 (-) 753 WP_072581535.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  A9C19_RS20110 (A9C19_19745) yabA 4148264..4148638 (-) 375 WP_072581536.1 DNA replication initiation control protein YabA -
  A9C19_RS20115 (A9C19_19750) - 4148652..4149479 (-) 828 WP_072581537.1 PSP1 domain-containing protein -
  A9C19_RS20120 (A9C19_19755) holB 4149482..4150474 (-) 993 WP_072581538.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10365.09 Da        Isoelectric Point: 5.2069

>NTDB_id=185330 A9C19_RS20090 WP_072581532.1 4145627..4145908(+) (abrB) [Bacillus weihaiensis strain Alg07]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDKIILKKYKPNMTCQVTGEVSDDNLALANGKLVLSREGAE
QILAEIKNQLVEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=185330 A9C19_RS20090 WP_072581532.1 4145627..4145908(+) (abrB) [Bacillus weihaiensis strain Alg07]
ATGAAATCTACAGGTATTGTACGTAAAGTTGATGAATTAGGACGCGTGGTTATTCCAATCGAATTACGCCGCACATTAGG
TATTGCTGAAAAGGACGCTTTAGAAATTTATGTTGATGATGACAAAATCATCTTAAAGAAATACAAGCCTAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGACAACCTTGCTTTAGCAAACGGTAAGTTAGTATTAAGCCGCGAAGGCGCTGAG
CAAATTCTTGCTGAAATTAAAAACCAATTAGTAGAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

92.222

96.774

0.892

Multiple sequence alignment