Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A9C19_RS19750 Genome accession   NZ_CP016020
Coordinates   4077020..4078393 (-) Length   457 a.a.
NCBI ID   WP_072581486.1    Uniprot ID   A0A1L3MWH2
Organism   Bacillus weihaiensis strain Alg07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4072020..4083393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS19730 (A9C19_19365) ispF 4073198..4073674 (-) 477 WP_072581483.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  A9C19_RS19735 (A9C19_19370) ispD 4073806..4074480 (-) 675 WP_072581484.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  A9C19_RS19740 (A9C19_19375) - 4074654..4075748 (-) 1095 WP_072581485.1 PIN/TRAM domain-containing protein -
  A9C19_RS19745 (A9C19_19380) disA 4075933..4077012 (-) 1080 WP_072581960.1 DNA integrity scanning diadenylate cyclase DisA -
  A9C19_RS19750 (A9C19_19385) radA 4077020..4078393 (-) 1374 WP_072581486.1 DNA repair protein RadA Machinery gene
  A9C19_RS19755 (A9C19_19390) clpC 4078907..4081348 (-) 2442 WP_072581487.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  A9C19_RS19760 (A9C19_19395) - 4081345..4082442 (-) 1098 WP_072581488.1 protein arginine kinase -
  A9C19_RS19765 (A9C19_19400) - 4082445..4082996 (-) 552 WP_072581489.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49720.29 Da        Isoelectric Point: 8.4558

>NTDB_id=185328 A9C19_RS19750 WP_072581486.1 4077020..4078393(-) (radA) [Bacillus weihaiensis strain Alg07]
MAKSKVKFICQSCGYESAKWMGKCPGCGEWNTMTEEVLKQATPRRAVFAHSTQTVQKPSPITKIETTQEPRIYTNMKEFN
RVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSSQLADNHHDVLYISGEESVKQTKLRADRLGVKSDKLLVLSETDLSFISK
AIEETQPSFVVVDSIQTVFHSEISSAPGSVSQVRESTAELMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKEVGLEEVQNPSEIFLEERSKGASGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPPKPTDVIIGEVGLTG
EVRRVSRIEQRVTEAAKLGFKRAIIPEANIGGWNAPKDIEIVGVKNVAEALYKTLGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=185328 A9C19_RS19750 WP_072581486.1 4077020..4078393(-) (radA) [Bacillus weihaiensis strain Alg07]
ATGGCAAAATCTAAGGTGAAATTTATATGTCAATCCTGTGGGTATGAATCTGCAAAGTGGATGGGTAAATGCCCAGGATG
TGGTGAATGGAATACCATGACTGAAGAGGTTCTAAAGCAAGCCACACCTCGACGAGCAGTTTTCGCCCATTCTACTCAAA
CCGTACAAAAGCCTTCCCCTATTACTAAGATCGAAACAACCCAAGAGCCAAGAATATACACGAATATGAAAGAATTTAAT
CGCGTACTAGGTAGTGGGATCGTCAAAGGGTCATTAGTATTAATTGGTGGAGACCCCGGAATAGGTAAATCAACCTTGCT
TTTACAGGTATCTTCTCAATTAGCTGATAATCATCACGATGTCCTTTATATTTCGGGAGAAGAATCTGTTAAACAAACTA
AACTACGCGCTGACCGTTTAGGTGTAAAGTCAGATAAATTATTAGTTCTTTCAGAGACAGATTTAAGCTTTATTTCTAAA
GCAATTGAAGAAACACAACCATCATTTGTTGTTGTGGATTCTATACAAACCGTCTTTCATAGTGAGATTAGTTCTGCACC
AGGGAGTGTATCACAAGTGAGGGAGTCGACGGCAGAATTAATGAGAATTGCTAAAACAAAAGGGATTGCTGTTTTTATCG
TTGGCCATGTAACGAAGGAAGGGTCAATTGCAGGACCGCGTTTGTTAGAACATATGGTTGATACGGTATTATATTTTGAA
GGAGAAAGACATCATACCTACCGAATATTACGAGCTGTTAAAAATCGATTTGGCTCTACAAATGAAATGGGCATTTTTGA
AATGAAGGAAGTGGGCTTAGAAGAGGTACAAAATCCTTCGGAAATCTTCCTTGAAGAGCGCTCAAAAGGAGCATCTGGCT
CCACTGTTGTTGCATCGATGGAAGGTACGAGGCCCGTTTTAGTTGAGATTCAAGCTCTTATATCACCAACTAGCTTCGGT
AATCCAAGGAGGATGGCAACAGGGATCGATCACAATCGGGTTCCTTTGCTGATGGCTGTTTTAGAAAAGAGAGTAGGTCT
ACTTTTACAAAATCAAGATGCTTATTTGAAAGTAGCAGGTGGTGTGAAGTTAGATGAACCTGCCATTGATTTAGCCGTTG
CTGTTAGTATTGCATCAAGCTTTAAAGACGCACCTCCGAAGCCAACAGATGTCATTATTGGGGAAGTTGGATTAACAGGA
GAGGTCAGAAGAGTTTCTCGAATTGAACAGCGAGTGACAGAAGCGGCGAAATTAGGATTTAAAAGGGCAATCATTCCAGA
AGCGAATATTGGAGGATGGAACGCACCTAAAGATATTGAAATCGTTGGCGTAAAAAACGTAGCAGAGGCCCTATATAAAA
CATTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MWH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

80.786

100

0.81
  radA Streptococcus mitis NCTC 12261

60.879

99.562

0.606
  radA Streptococcus pneumoniae Rx1

60.879

99.562

0.606
  radA Streptococcus pneumoniae D39

60.879

99.562

0.606
  radA Streptococcus pneumoniae R6

60.879

99.562

0.606
  radA Streptococcus pneumoniae TIGR4

60.879

99.562

0.606
  radA Streptococcus mitis SK321

60.659

99.562

0.604

Multiple sequence alignment