Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BSK2_RS06150 Genome accession   NZ_CP020367
Coordinates   1197487..1198404 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain GQJK2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192487..1203404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS06135 (BSK2_06135) trpS 1193068..1194060 (-) 993 WP_080530043.1 tryptophan--tRNA ligase -
  BSK2_RS06140 (BSK2_06140) oppA 1194804..1196441 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  BSK2_RS06145 (BSK2_06145) oppB 1196548..1197483 (+) 936 WP_048654864.1 oligopeptide ABC transporter permease OppB -
  BSK2_RS06150 (BSK2_06150) amiD 1197487..1198404 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  BSK2_RS06155 (BSK2_06155) oppD 1198409..1199485 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  BSK2_RS06160 (BSK2_06160) oppF 1199487..1200404 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  BSK2_RS06165 (BSK2_06165) yjbB 1200512..1201729 (+) 1218 WP_080530044.1 MFS transporter -
  BSK2_RS06170 (BSK2_06170) yjbC 1201893..1202471 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BSK2_RS06175 (BSK2_06175) spx 1202652..1203047 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=185325 BSK2_RS06150 WP_003232954.1 1197487..1198404(+) (amiD) [Bacillus subtilis strain GQJK2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=185325 BSK2_RS06150 WP_003232954.1 1197487..1198404(+) (amiD) [Bacillus subtilis strain GQJK2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATCTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCCGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCCGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment