Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A9C19_RS06205 Genome accession   NZ_CP016020
Coordinates   1312577..1313329 (+) Length   250 a.a.
NCBI ID   WP_072579137.1    Uniprot ID   A0A1L3MPR8
Organism   Bacillus weihaiensis strain Alg07     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1307577..1318329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS06175 (A9C19_06035) - 1307686..1309848 (+) 2163 WP_072579131.1 HD family phosphohydrolase -
  A9C19_RS06180 (A9C19_06040) ybeY 1309848..1310321 (+) 474 WP_072579132.1 rRNA maturation RNase YbeY -
  A9C19_RS06185 (A9C19_06045) - 1310302..1310682 (+) 381 WP_072579133.1 diacylglycerol kinase family protein -
  A9C19_RS06190 (A9C19_06050) - 1310883..1311281 (+) 399 WP_072579134.1 cytidine deaminase -
  A9C19_RS06195 (A9C19_06055) era 1311274..1312182 (+) 909 WP_072579135.1 GTPase Era -
  A9C19_RS06200 (A9C19_06060) - 1312403..1312546 (+) 144 WP_072579136.1 YqzL family protein -
  A9C19_RS06205 (A9C19_06065) recO 1312577..1313329 (+) 753 WP_072579137.1 DNA repair protein RecO Machinery gene
  A9C19_RS06210 (A9C19_06070) glyQ 1313658..1314548 (+) 891 WP_072579138.1 glycine--tRNA ligase subunit alpha -
  A9C19_RS06215 (A9C19_06075) glyS 1314541..1316604 (+) 2064 WP_072579139.1 glycine--tRNA ligase subunit beta -
  A9C19_RS06220 (A9C19_06080) - 1316880..1317509 (+) 630 WP_072581766.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28436.89 Da        Isoelectric Point: 8.0055

>NTDB_id=185303 A9C19_RS06205 WP_072579137.1 1312577..1313329(+) (recO) [Bacillus weihaiensis strain Alg07]
MLQKCEGIVIRSTNYGETNKIITLYTRELGKVGVMARGAKKPNSRLTSVTQLFTYGTFLFQKSSGLGGLQQGESIHSLRG
IREDIFLTAYAAYIVELLDKSTENLEVNPFVFELLKQTLFYLDDEVDPDILVNIFEMKMLSVLGIAPQLDGCSICGNKDG
TFHFSIRTGGFICHRCFEKDSYRIPISPTTVKLLRLFYYFDLNRLGNVSVKDETKIELKTVIKAYFDEYSGLNLKSRRFL
DQLDSLKDKL

Nucleotide


Download         Length: 753 bp        

>NTDB_id=185303 A9C19_RS06205 WP_072579137.1 1312577..1313329(+) (recO) [Bacillus weihaiensis strain Alg07]
TTGCTTCAAAAATGTGAAGGTATTGTCATACGCTCTACCAATTATGGTGAGACAAACAAAATTATAACTTTATATACCAG
AGAATTAGGGAAAGTTGGGGTTATGGCAAGAGGCGCAAAGAAACCGAACAGTCGTCTTACGTCAGTTACCCAACTTTTTA
CTTATGGGACGTTTTTGTTTCAAAAATCATCTGGGCTCGGAGGTCTGCAGCAAGGAGAATCGATTCATTCTCTGAGAGGT
ATTCGTGAAGATATTTTCCTAACTGCCTATGCAGCTTATATTGTTGAGCTATTAGATAAGAGTACTGAAAATTTGGAAGT
AAACCCATTCGTTTTTGAGTTATTGAAGCAAACCCTTTTTTATTTAGATGATGAGGTTGATCCTGATATTCTAGTGAATA
TTTTTGAAATGAAAATGCTATCTGTTTTAGGAATTGCTCCTCAATTAGATGGTTGCTCGATTTGTGGGAACAAAGATGGC
ACCTTCCACTTTTCTATTCGAACAGGTGGTTTCATATGTCACAGGTGCTTTGAAAAAGATTCTTATCGTATACCAATCTC
CCCAACAACTGTTAAACTGTTACGACTATTTTATTATTTTGATTTAAATCGTTTGGGGAATGTTTCTGTGAAGGATGAAA
CCAAGATAGAACTTAAAACGGTCATAAAGGCATATTTTGATGAATATTCAGGTTTGAATTTAAAGTCACGACGATTTTTA
GATCAATTAGATTCATTGAAAGATAAACTGTAG

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MPR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

65.992

98.8

0.652

Multiple sequence alignment