Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   A9C19_RS01745 Genome accession   NZ_CP016020
Coordinates   385405..386091 (+) Length   228 a.a.
NCBI ID   WP_072578357.1    Uniprot ID   A0A1L3MMK5
Organism   Bacillus weihaiensis strain Alg07     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 380405..391091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS01730 (A9C19_01680) - 382123..383208 (-) 1086 WP_072578354.1 glycosyltransferase family 4 protein -
  A9C19_RS01735 (A9C19_01685) - 383376..384008 (-) 633 WP_072578355.1 YigZ family protein -
  A9C19_RS01740 (A9C19_01690) degS 384150..385313 (+) 1164 WP_072578356.1 sensor histidine kinase Regulator
  A9C19_RS01745 (A9C19_01695) degU 385405..386091 (+) 687 WP_072578357.1 response regulator Regulator
  A9C19_RS01750 (A9C19_01700) - 386420..387262 (+) 843 WP_072578358.1 DegV family protein -
  A9C19_RS01755 (A9C19_01705) - 387420..387632 (+) 213 WP_072578359.1 Myb-like DNA-binding domain-containing protein -
  A9C19_RS01760 (A9C19_01710) - 387629..389122 (+) 1494 WP_072578360.1 DEAD/DEAH box helicase -
  A9C19_RS01765 (A9C19_01715) - 389200..389508 (+) 309 WP_072578361.1 late competence development ComFB family protein -
  A9C19_RS01770 (A9C19_01720) - 389663..390175 (+) 513 WP_158515043.1 ComF family protein -
  A9C19_RS01775 (A9C19_01725) - 390236..390655 (+) 420 WP_072578363.1 TIGR03826 family flagellar region protein -
  A9C19_RS01780 (A9C19_01730) flgM 390729..390992 (+) 264 WP_072578364.1 flagellar biosynthesis anti-sigma factor FlgM -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25562.21 Da        Isoelectric Point: 5.3700

>NTDB_id=185290 A9C19_RS01745 WP_072578357.1 385405..386091(+) (degU) [Bacillus weihaiensis strain Alg07]
MKTKIVIIDDHQLFREGVKRILDFEPSFEVVAEGDDGEDALEIVESHKPDVVIMDINMPNMNGVEATKQLIEANEDTKVI
ILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSSGQATPTQPLQPEIRR
PLHILTRRECEVLQMLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVFSIKNGWVEVK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=185290 A9C19_RS01745 WP_072578357.1 385405..386091(+) (degU) [Bacillus weihaiensis strain Alg07]
ATGAAAACAAAAATCGTAATTATTGATGACCATCAATTGTTCCGTGAAGGTGTAAAACGCATCTTAGACTTTGAGCCAAG
CTTCGAGGTTGTTGCGGAAGGTGATGATGGTGAAGATGCATTAGAAATAGTTGAATCACATAAGCCTGATGTTGTGATTA
TGGATATTAATATGCCAAACATGAATGGCGTAGAAGCAACAAAGCAGTTAATAGAAGCTAATGAGGATACAAAGGTCATT
ATTTTGTCCATCCATGATGATGAAAACTATGTTACACATGCGTTGAAAACAGGTGCTAGAGGCTACTTGTTAAAAGAAAT
GGATGCTGACACACTAATTGAAGCAGTAAAGGTTGTCGCAGACGGAGGCTCTTATTTACATCCGAAGGTCACACATAACC
TTGTGAATGAGTTTAGAAGATTGGCAACGTCAAGTGGACAAGCTACCCCTACGCAACCACTACAGCCAGAAATTCGTCGC
CCATTACATATTTTAACTCGTCGTGAATGCGAGGTTCTACAAATGCTAGCAGATGGAAAAAGCAACCGTGGGATCGGTGA
GGCTTTATTCATTAGTGAAAAAACAGTTAAAAACCATGTGAGTAACATTTTACAAAAAATGAACGTAAACGACCGAACTC
AAGCTGTTGTGTTTTCCATTAAAAATGGCTGGGTTGAAGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(164-218)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MMK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

85.903

99.561

0.855

Multiple sequence alignment