Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A9Y61_RS10560 Genome accession   NZ_CP016017
Coordinates   1955450..1958572 (-) Length   1040 a.a.
NCBI ID   WP_196211034.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950450..1963572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS10540 (A9Y61_10540) - 1950635..1951861 (+) 1227 WP_047920901.1 PilT/PilU family type 4a pilus ATPase -
  A9Y61_RS10545 (A9Y61_10545) yccS 1951978..1954128 (+) 2151 WP_003697785.1 YccS family putative transporter -
  A9Y61_RS10550 (A9Y61_10550) - 1954660..1954944 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  A9Y61_RS10560 (A9Y61_10560) pilC 1955450..1958572 (-) 3123 WP_196211034.1 PilC family type IV pilus tip adhesin Machinery gene
  A9Y61_RS10565 (A9Y61_10565) - 1959415..1959678 (+) 264 WP_017147189.1 hypothetical protein -
  A9Y61_RS10570 (A9Y61_10570) gnd 1959758..1961206 (+) 1449 WP_003705185.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  A9Y61_RS10575 (A9Y61_10575) waaA 1961269..1962540 (+) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A9Y61_RS10580 (A9Y61_10580) - 1962581..1963030 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 1040 a.a.        Molecular weight: 112990.59 Da        Isoelectric Point: 9.7564

>NTDB_id=185247 A9Y61_RS10560 WP_196211034.1 1955450..1958572(-) (pilC) [Neisseria gonorrhoeae strain 34769]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGGGQAQARDYAIIMNGRNQPEVKSHVPSSIKDKDRKRKYTHHKYKTGGGSV
SFDNSDELVSQQSGTAVFGTATYLPPYGKVSGFDADALKERVNAAGWIRTTRIALAGYSYADVVCRSGTGCPKLVYKTRF
TFGQQGLKKKVGSKLDIYEDKSRENSPIYKLSDYPWLGVSFNLGSENTVKDGKSFNKLISSFSEDNNNQTIVSTTEDRPI
SLGDPQREHTAVAYYLNAKLHLLDKKKIEDIAQGKTVRLGVLKPSIDVWQGNTGLVSLLGFHATWDIKDTGQIPVKLGLP
TVKAGRCINKPNPNPKSKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKPLS
ENEIKSKEPSFMGRETIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLEADEWKKVLLPWTVRGP
GNDNKFKSINQKPDKYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMP
RQYFDNDTSALKGSTLAQELRTFAEKGYVGDRYGVDGGFVLRQVELRGQKHVFMFGAMGLGGRGAYALDLSKIDGNYPAA
APLFDVKNGDNNGKNRVEVELGYTVGTPQIGKIRNGTYSAFLASGYAAKEIDDPTNKTALYVYDLKNTLGTPIRKIDVKD
GKGGLSSPTLVDKDLDGIVDIAYAGDRGGKMYRFDLSNSDPSKWSVSTIFEGAKPITSAPAVSRLADKRVVIFGTGSDLS
EDDVLNTDEQYIYGIFDDDEGTVKVTVQNGTGGGLLEQVLSEENKTLFLNKRSDGSGSKGWAVKLTGGQRVTVKPIVVLR
TAFVTIRKYKDGGCGAETAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKKTAGGKSVPIGCMEKGGKTVCPNGYV
YDKPVNVRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3123 bp        

>NTDB_id=185247 A9Y61_RS10560 WP_196211034.1 1955450..1958572(-) (pilC) [Neisseria gonorrhoeae strain 34769]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGGGGGGCAGGCGCAAGCCCGTGACTACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTAAAGTCGC
ATGTGCCATCTTCAATAAAGGACAAAGACAGGAAGCGCAAATATACTCATCATAAGTACAAAACAGGAGGAGGCTCTGTC
TCATTCGACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTA
CGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCGTCAATGCCGCCGGTTGGATTCGTACCACCCGCATCG
CGCTGGCAGGCTACAGCTACGCCGATGTCGTATGCAGAAGCGGCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTT
ACCTTCGGTCAACAAGGGTTGAAAAAAAAGGTAGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCC
CATTTACAAATTGTCGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGAATACCGTCAAAGATGGTAAAT
CATTCAACAAATTGATATCTTCTTTTAGTGAAGACAATAATAATCAAACCATCGTCTCTACGACAGAAGACCGCCCTATT
TCCCTTGGCGACCCGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAAAAA
GATTGAAGATATCGCCCAAGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGTGGCAAGGAAATACGG
GGCTTGTCAGCTTACTAGGTTTTCATGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCCG
ACAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATCCCAAATCCAAAGCCCCTTCGCCGGCACTGACCGCCCC
CGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGACAGTTCGA
GCAGCAAAATTTTCCTGCAAAACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCCTTGAGT
GAGAATGAGATTAAAAGTAAAGAGCCGAGTTTCATGGGGCGGGAAACAATCATCCGATTGGATGACGGCGTACATTTGAT
CAAACTGAATGGAAGCAAGGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCG
GCATTGTTAAGGAAGCGAACGTCAATCTTGAAGCTGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCC
GGTAATGACAATAAATTTAAATCAATTAACCAAAAACCAGACAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAA
TCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATCTGGCAACCGCCGCGAACGACGGGATGG
TGCATATCTTCAAAAAAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCG
CGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGGCTCCACCCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGG
CTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCAAGTCGAACTGCGCGGGCAAAAACACGTGTTTA
TGTTCGGCGCGATGGGTTTGGGCGGCAGGGGCGCGTATGCCTTGGATTTAAGCAAAATCGACGGAAATTATCCGGCCGCC
GCCCCCCTGTTTGATGTCAAAAATGGCGATAATAACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGCAC
GCCGCAAATCGGCAAAATCCGCAACGGCACATACTCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAGAAATTGACGACC
CAACAAATAAAACCGCGCTGTATGTATATGATTTGAAAAACACCTTAGGTACGCCGATTAGAAAAATCGATGTGAAGGAC
GGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCG
GGGCGGGAAGATGTACCGCTTTGATTTGAGCAATTCCGATCCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGCAA
AACCGATTACTTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGCACGGGCAGCGATTTGAGT
GAAGATGATGTACTGAATACGGACGAACAATATATTTACGGTATCTTTGACGACGATGAGGGGACGGTTAAGGTAACGGT
ACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAGTGAGGAAAATAAAACCTTATTCCTGAACAAGAGATCCG
ACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACAACGCGTTACCGTCAAACCGATCGTGGTATTGCGT
ACCGCCTTCGTAACCATCCGCAAATATAAAGACGGCGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGA
CGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATAAGGATGTCGCACAATATTCCGGCCATA
AGAAAACCGCCGGCGGCAAGTCCGTCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTT
TACGACAAACCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGG
CGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGGGTGCGCACCCTGC
TGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTC
TGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(510-850)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.928

100

0.732

Multiple sequence alignment