Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A9Y61_RS02395 Genome accession   NZ_CP016017
Coordinates   448341..449006 (+) Length   221 a.a.
NCBI ID   WP_047920982.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443341..454006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS02370 (A9Y61_02370) cysT 443461..444299 (-) 839 Protein_446 sulfate ABC transporter permease subunit CysT -
  A9Y61_RS02375 (A9Y61_02375) - 444485..444817 (+) 333 WP_003687908.1 hypothetical protein -
  A9Y61_RS02380 (A9Y61_02380) - 445144..445653 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A9Y61_RS02385 (A9Y61_02385) - 445883..446464 (-) 582 WP_033910016.1 superoxide dismutase -
  A9Y61_RS02390 (A9Y61_02390) dnaB 446627..448033 (+) 1407 WP_047920786.1 replicative DNA helicase -
  A9Y61_RS02395 (A9Y61_02395) pilH 448341..449006 (+) 666 WP_047920982.1 GspH/FimT family pseudopilin Machinery gene
  A9Y61_RS02400 (A9Y61_02400) pilI 449038..449646 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  A9Y61_RS02405 (A9Y61_02405) pilJ 449643..450611 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  A9Y61_RS02410 (A9Y61_02410) pilK 450590..451198 (+) 609 WP_047920987.1 pilus assembly PilX family protein Machinery gene
  A9Y61_RS02415 (A9Y61_02415) pilL 451200..451673 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  A9Y61_RS02420 (A9Y61_02420) - 451743..452051 (-) 309 WP_047920338.1 AzlD family protein -
  A9Y61_RS13755 - 452048..452758 (-) 711 Protein_457 AzlC family ABC transporter permease -
  A9Y61_RS02430 (A9Y61_02430) dut 452924..453376 (+) 453 WP_010359930.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24678.14 Da        Isoelectric Point: 9.3895

>NTDB_id=185218 A9Y61_RS02395 WP_047920982.1 448341..449006(+) (pilH) [Neisseria gonorrhoeae strain 34769]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDSTVN
NQCDFGKKGQGMLAFGDKNDNKAYDGDTKDVFLRNVVLNDDINDKRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLP
DQNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=185218 A9Y61_RS02395 WP_047920982.1 448341..449006(+) (pilH) [Neisseria gonorrhoeae strain 34769]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACAGTACGGTCAAC
AACCAGTGCGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTACACCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCC
GATCAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

91.855

100

0.919

Multiple sequence alignment