Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | A9Y60_RS02965 | Genome accession | NZ_CP016016 |
| Coordinates | 563052..564014 (+) | Length | 320 a.a. |
| NCBI ID | WP_047921846.1 | Uniprot ID | A0AA44ZGD9 |
| Organism | Neisseria gonorrhoeae strain 34530 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 558052..569014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9Y60_RS02940 (A9Y60_02940) | - | 558601..559110 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| A9Y60_RS02945 (A9Y60_02945) | - | 559342..559923 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| A9Y60_RS02950 (A9Y60_02950) | dnaB | 560087..561490 (+) | 1404 | WP_012503477.1 | replicative DNA helicase | - |
| A9Y60_RS15535 | - | 561484..561596 (-) | 113 | Protein_557 | IS5/IS1182 family transposase | - |
| A9Y60_RS02955 (A9Y60_02955) | pilH | 561747..562409 (+) | 663 | WP_047916986.1 | GspH/FimT family pseudopilin | Machinery gene |
| A9Y60_RS02960 (A9Y60_02960) | pilI | 562441..563055 (+) | 615 | WP_012503479.1 | type IV pilus modification protein PilV | Machinery gene |
| A9Y60_RS02965 (A9Y60_02965) | pilJ | 563052..564014 (+) | 963 | WP_047921846.1 | PilW family protein | Machinery gene |
| A9Y60_RS02970 (A9Y60_02970) | pilK | 563993..564601 (+) | 609 | WP_047921847.1 | pilus assembly PilX family protein | Machinery gene |
| A9Y60_RS02975 (A9Y60_02975) | pilL | 564603..565076 (+) | 474 | WP_012503482.1 | PilX family type IV pilin | Machinery gene |
| A9Y60_RS02980 (A9Y60_02980) | - | 565146..565454 (-) | 309 | WP_003706588.1 | AzlD family protein | - |
| A9Y60_RS02985 (A9Y60_02985) | - | 565451..566162 (-) | 712 | Protein_564 | AzlC family ABC transporter permease | - |
| A9Y60_RS02990 (A9Y60_02990) | dut | 566328..566780 (+) | 453 | WP_003701071.1 | dUTP diphosphatase | - |
| A9Y60_RS02995 (A9Y60_02995) | dapC | 566852..568039 (+) | 1188 | WP_003701073.1 | succinyldiaminopimelate transaminase | - |
| A9Y60_RS03000 (A9Y60_03000) | yaaA | 568195..568974 (+) | 780 | WP_003687925.1 | peroxide stress protein YaaA | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 35251.96 Da Isoelectric Point: 8.4268
>NTDB_id=185175 A9Y60_RS02965 WP_047921846.1 563052..564014(+) (pilJ) [Neisseria gonorrhoeae strain 34530]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDANASAETTV
VSSCGAISKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKV
KRMDVRYIYVSDCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDANASAETTV
VSSCGAISKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKV
KRMDVRYIYVSDCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 963 bp
>NTDB_id=185175 A9Y60_RS02965 WP_047921846.1 563052..564014(+) (pilJ) [Neisseria gonorrhoeae strain 34530]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTC
GTCAGCAGCTGTGGCGCAATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCA
GGATTCTGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATAATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTT
AAACGTATGGATGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATA
TACGGGTAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTT
TGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTC
GTCAGCAGCTGTGGCGCAATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCA
GGATTCTGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATAATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTT
AAACGTATGGATGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATA
TACGGGTAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTT
TGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
87.5 |
100 |
0.875 |