Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM483_RS20645 Genome accession   NZ_CP020116
Coordinates   3964916..3965392 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain AR_0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3959916..3970392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM483_RS29035 (AM483_20905) - 3962029..3962334 (-) 306 Protein_3836 helix-turn-helix domain-containing protein -
  AM483_RS29130 - 3962597..3962731 (-) 135 Protein_3837 transcriptional regulator -
  AM483_RS28325 - 3962701..3962850 (-) 150 Protein_3838 hypothetical protein -
  AM483_RS20615 (AM483_20910) - 3962956..3963132 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  AM483_RS20620 (AM483_20915) - 3963149..3963637 (-) 489 WP_000761690.1 DUF5983 family protein -
  AM483_RS20625 (AM483_20920) - 3963634..3964011 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  AM483_RS20630 (AM483_20925) - 3964101..3964469 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM483_RS20640 (AM483_20935) - 3964632..3964853 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM483_RS20645 (AM483_20940) radC 3964916..3965392 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  AM483_RS20650 (AM483_20945) - 3965408..3965881 (-) 474 WP_001350782.1 antirestriction protein -
  AM483_RS20660 (AM483_20955) - 3966223..3967041 (-) 819 WP_001234738.1 DUF932 domain-containing protein -
  AM483_RS20670 (AM483_20965) - 3967159..3967354 (-) 196 Protein_3847 DUF905 family protein -
  AM483_RS20675 (AM483_20970) cah 3967425..3970271 (-) 2847 WP_021526504.1 calcium-binding autotransporter Cah -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=185145 AM483_RS20645 WP_001186775.1 3964916..3965392(-) (radC) [Escherichia coli strain AR_0104]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=185145 AM483_RS20645 WP_001186775.1 3964916..3965392(-) (radC) [Escherichia coli strain AR_0104]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment