Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC767_RS21985 Genome accession   NZ_CP020107
Coordinates   4225614..4226090 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 13E0767     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4220614..4231090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC767_RS21955 (EC767_21960) - 4221108..4222335 (-) 1228 Protein_4061 IS3 family transposase -
  EC767_RS21965 (EC767_21970) - 4223892..4224087 (+) 196 Protein_4063 DUF905 family protein -
  EC767_RS21975 (EC767_21980) - 4224205..4225023 (+) 819 WP_024215690.1 DUF932 domain-containing protein -
  EC767_RS21980 (EC767_21985) - 4225114..4225599 (+) 486 WP_024215689.1 antirestriction protein -
  EC767_RS21985 (EC767_21990) radC 4225614..4226090 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  EC767_RS21990 (EC767_21995) - 4226153..4226374 (+) 222 WP_000691817.1 DUF987 domain-containing protein -
  EC767_RS21995 (EC767_22000) - 4226448..4226813 (+) 366 WP_001443430.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EC767_RS22000 (EC767_22005) cbtA 4226903..4227279 (+) 377 Protein_4069 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EC767_RS22005 (EC767_22010) - 4227276..4227763 (+) 488 Protein_4070 DUF5983 family protein -
  EC767_RS22010 (EC767_22015) - 4227775..4227972 (+) 198 WP_000839256.1 DUF957 domain-containing protein -
  EC767_RS22015 (EC767_22020) - 4228057..4228899 (+) 843 WP_001280497.1 DUF4942 domain-containing protein -
  EC767_RS22020 (EC767_22025) yghD 4229180..4229716 (-) 537 WP_024243879.1 GspM family type II secretion system protein YghD -
  EC767_RS22025 (EC767_22030) gspL 4229718..4230896 (-) 1179 WP_000094963.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=185074 EC767_RS21985 WP_001186192.1 4225614..4226090(+) (radC) [Escherichia coli strain 13E0767]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=185074 EC767_RS21985 WP_001186192.1 4225614..4226090(+) (radC) [Escherichia coli strain 13E0767]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTAGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392