Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC767_RS21220 Genome accession   NZ_CP020107
Coordinates   4081596..4082072 (-) Length   158 a.a.
NCBI ID   WP_021513354.1    Uniprot ID   -
Organism   Escherichia coli strain 13E0767     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4076596..4087072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC767_RS21190 (EC767_21195) paoD 4078185..4079141 (+) 957 WP_000121330.1 molybdenum cofactor insertion chaperone PaoD -
  EC767_RS21195 (EC767_21200) - 4079192..4079530 (+) 339 Protein_3921 LysR substrate-binding domain-containing protein -
  EC767_RS21200 (EC767_21205) - 4079851..4080219 (-) 369 WP_001094399.1 TA system toxin CbtA family protein -
  EC767_RS21205 (EC767_21210) - 4080240..4080598 (-) 359 Protein_3923 type IV toxin-antitoxin system YeeU family antitoxin -
  EC767_RS21210 (EC767_21215) - 4080649..4081293 (-) 645 WP_000086755.1 hypothetical protein -
  EC767_RS21215 (EC767_21220) - 4081312..4081533 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  EC767_RS21220 (EC767_21225) radC 4081596..4082072 (-) 477 WP_021513354.1 RadC family protein Machinery gene
  EC767_RS21225 (EC767_21230) - 4082088..4082561 (-) 474 WP_021552431.1 antirestriction protein -
  EC767_RS21235 (EC767_21240) - 4082862..4083680 (-) 819 WP_080029847.1 DUF932 domain-containing protein -
  EC767_RS21240 (EC767_21245) - 4083771..4084004 (-) 234 WP_001117568.1 DUF905 family protein -
  EC767_RS21245 (EC767_21250) - 4084075..4086921 (-) 2847 WP_000820514.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17647.24 Da        Isoelectric Point: 7.2020

>NTDB_id=185073 EC767_RS21220 WP_021513354.1 4081596..4082072(-) (radC) [Escherichia coli strain 13E0767]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVSPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=185073 EC767_RS21220 WP_021513354.1 4081596..4082072(-) (radC) [Escherichia coli strain 13E0767]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCTCACCCAGCAAGGCAGACCGCCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGACTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399