Detailed information NTG0185037

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EC767_RS06575
• Genome accession: NZ_CP020107
• Coordinates: 1309433..1310425 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 13E0767
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1304433..1315425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EC767_RS06545 (EC767_06545)	ispD	1304494..1305204 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EC767_RS06550 (EC767_06550)	ispF	1305204..1305683 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EC767_RS06555 (EC767_06555)	truD	1305680..1306729 (+)	1050	WP_040092321.1	tRNA pseudouridine(13) synthase TruD	-
EC767_RS06560 (EC767_06560)	surE	1306710..1307471 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EC767_RS06565 (EC767_06565)	pcm	1307465..1308091 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EC767_RS06570 (EC767_06570)	nlpD	1308276..1309370 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EC767_RS06575 (EC767_06575)	rpoS	1309433..1310425 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EC767_RS06580 (EC767_06580)	-	1310546..1310953 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
EC767_RS06585 (EC767_06585)	-	1311100..1311693 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EC767_RS06590 (EC767_06590)	-	1311693..1313127 (+)	1435	Protein_1203	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EC767_RS06595 (EC767_06595)	-	1313138..1313374 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EC767_RS06600 (EC767_06600)	ygbN	1313413..1314777 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=185037 EC767_RS06575 WP_000081550.1 1309433..1310425(+) (rpoS) [Escherichia coli strain 13E0767]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=185037 EC767_RS06575 WP_000081550.1 1309433..1310425(+) (rpoS) [Escherichia coli strain 13E0767]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715