Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC780_RS00030 Genome accession   NZ_CP020106
Coordinates   3402..4070 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 13E0780     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC780_RS00005 (EC780_00005) waaA 51..1328 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EC780_RS00010 (EC780_00010) coaD 1336..1815 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EC780_RS00015 (EC780_00015) mutM 1854..2663 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EC780_RS00020 (EC780_00020) rpmG 2761..2928 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EC780_RS00025 (EC780_00025) rpmB 2949..3185 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EC780_RS00030 (EC780_00030) radC 3402..4070 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  EC780_RS00035 (EC780_00035) coaBC 4242..5462 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EC780_RS00040 (EC780_00040) dut 5440..5898 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EC780_RS00045 (EC780_00045) slmA 6005..6601 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EC780_RS00050 (EC780_00050) pyrE 6638..7279 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EC780_RS00055 (EC780_00055) rph 7345..8061 (-) 717 WP_001247089.1 ribonuclease PH -
  EC780_RS00065 (EC780_00065) yicC 8188..9045 (+) 858 WP_080025908.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=184932 EC780_RS00030 WP_001298959.1 3402..4070(-) (radC) [Escherichia coli strain 13E0780]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=184932 EC780_RS00030 WP_001298959.1 3402..4070(-) (radC) [Escherichia coli strain 13E0780]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496