Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   B4U62_RS02435 Genome accession   NZ_CP020102
Coordinates   476099..476533 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain NCIB 3610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471099..481533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U62_RS02405 (B4U62_02405) ydaD 471749..472609 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  B4U62_RS02410 (B4U62_02410) lyxE 472625..473128 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  B4U62_RS02415 (B4U62_02415) ydaF 473214..473765 (+) 552 WP_003246691.1 GNAT family protein -
  B4U62_RS02420 (B4U62_02420) ydaG 473843..474265 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  B4U62_RS02425 (B4U62_02425) amj 474771..475580 (+) 810 WP_003234394.1 lipid II flippase Amj -
  B4U62_RS02430 (B4U62_02430) ydzA 475624..475914 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  B4U62_RS02435 (B4U62_02435) lrpC 476099..476533 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  B4U62_RS02440 (B4U62_02440) topB 476598..478781 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  B4U62_RS02445 (B4U62_02445) ephJ 478984..480072 (+) 1089 WP_003246551.1 lipoprotein -
  B4U62_RS02450 (B4U62_02450) epsK 480053..480904 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=184795 B4U62_RS02435 WP_003246585.1 476099..476533(+) (lrpC) [Bacillus subtilis strain NCIB 3610]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=184795 B4U62_RS02435 WP_003246585.1 476099..476533(+) (lrpC) [Bacillus subtilis strain NCIB 3610]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1