Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A9O66_RS07190 Genome accession   NZ_CP015958
Coordinates   1636908..1638428 (+) Length   506 a.a.
NCBI ID   WP_107200755.1    Uniprot ID   A0A9Q6WKZ9
Organism   Paraburkholderia caribensis strain 852011     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631908..1643428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9O66_RS07165 (A9O66_07140) kdsD 1633044..1634027 (+) 984 WP_054929661.1 arabinose 5-phosphate isomerase KdsD -
  A9O66_RS07170 (A9O66_07145) - 1634027..1634587 (+) 561 WP_054929660.1 KdsC family phosphatase -
  A9O66_RS07175 (A9O66_07150) lptC 1634584..1635189 (+) 606 WP_107200756.1 LPS export ABC transporter periplasmic protein LptC -
  A9O66_RS07180 (A9O66_07155) lptA 1635211..1635888 (+) 678 WP_054929658.1 lipopolysaccharide transport periplasmic protein LptA -
  A9O66_RS07185 (A9O66_07160) lptB 1635885..1636667 (+) 783 WP_035986723.1 LPS export ABC transporter ATP-binding protein -
  A9O66_RS07190 (A9O66_07165) rpoN/rpoN1 1636908..1638428 (+) 1521 WP_107200755.1 RNA polymerase factor sigma-54 Machinery gene
  A9O66_RS07195 (A9O66_07170) hpf 1638604..1638963 (+) 360 WP_012399744.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A9O66_RS07200 (A9O66_07175) - 1639263..1639778 (+) 516 WP_107200754.1 PTS sugar transporter subunit IIA -
  A9O66_RS07205 (A9O66_07180) hprK 1640012..1640980 (+) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  A9O66_RS07210 (A9O66_07185) rapZ 1641058..1641951 (+) 894 WP_060599302.1 RNase adapter RapZ -
  A9O66_RS07215 (A9O66_07190) - 1642016..1642651 (+) 636 WP_054929655.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55556.43 Da        Isoelectric Point: 4.8325

>NTDB_id=184755 A9O66_RS07190 WP_107200755.1 1636908..1638428(+) (rpoN/rpoN1) [Paraburkholderia caribensis strain 852011]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRVAADGTVIAQTSQNTSPEEMS
GAPPSSSSSTSSGESQEGGEPQGVDEYNGMGSDANSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILADLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLSRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=184755 A9O66_RS07190 WP_107200755.1 1636908..1638428(+) (rpoN/rpoN1) [Paraburkholderia caribensis strain 852011]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTCGAACTGCAACAGGAAGTGTCGATGGCGATCGCCCAGAATCCGTTGCTCGAAACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCCGCCGACGGCACTGTCATCGCACAGACCTCGCAGAACACGTCGCCGGAAGAGATGTCG
GGCGCGCCGCCGTCCTCGTCGTCGTCGACGTCCTCCGGCGAAAGCCAGGAAGGCGGCGAGCCACAGGGTGTGGACGAATA
CAACGGCATGGGTTCGGATGCGAACTCGGACGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGCGTA
ACGGGAGCAAGCGCACGGGACCGCGCGCTCATCACGTTCCTGATCGAATCGCTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCGCCGATTTGCCCGAAGAACTCGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTGCTGC
ACAGCTTCGACCCAGCGGGGGTCGGCGCGCGTTCGGCGTCGGAATGCCTGCGTTTGCAGTTGAGCCGGCTCGAGCCGTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCACCTGGAACTGCTCGCCGCACGCGACTTCACGCGATTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGTGCGGCCT
ACGGCAAGGCCGAGGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCCGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGCTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCGCGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTGTCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAAATCCCGGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.996

100

0.67

Multiple sequence alignment