Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC725_RS17765 Genome accession   NZ_CP020092
Coordinates   3310463..3311092 (-) Length   209 a.a.
NCBI ID   WP_000839145.1    Uniprot ID   -
Organism   Escherichia coli strain 13E0725     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3305463..3316092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC725_RS17750 (EC725_17755) helD 3305705..3307759 (-) 2055 WP_001397074.1 DNA helicase IV -
  EC725_RS17755 (EC725_17760) yccF 3307882..3308328 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EC725_RS17760 (EC725_17765) yccS 3308338..3310500 (+) 2163 WP_000875026.1 YccS family putative transporter -
  EC725_RS17765 (EC725_17770) sxy/tfoX 3310463..3311092 (-) 630 WP_000839145.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC725_RS17770 (EC725_17775) sulA 3311311..3311820 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC725_RS17780 (EC725_17785) ompA 3312177..3313217 (+) 1041 WP_000750416.1 porin OmpA -
  EC725_RS17785 (EC725_17790) matP 3313293..3313745 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC725_RS17790 (EC725_17795) ycbZ 3313931..3315691 (+) 1761 WP_032314553.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=184752 EC725_RS17765 WP_000839145.1 3310463..3311092(-) (sxy/tfoX) [Escherichia coli strain 13E0725]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRDRLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=184752 EC725_RS17765 WP_000839145.1 3310463..3311092(-) (sxy/tfoX) [Escherichia coli strain 13E0725]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGATAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGTCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995