Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EC725_RS06980 Genome accession   NZ_CP020092
Coordinates   1332487..1333002 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 13E0725     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327487..1338002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC725_RS06940 (EC725_06940) csrA 1328215..1328400 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EC725_RS06965 (EC725_06965) yqaB 1329717..1330283 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EC725_RS06970 (EC725_06970) yqaA 1330280..1330708 (+) 429 WP_001287457.1 YqaA family protein -
  EC725_RS06975 (EC725_06975) gshA 1330781..1332337 (+) 1557 WP_000611782.1 glutamate--cysteine ligase -
  EC725_RS06980 (EC725_06980) luxS 1332487..1333002 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EC725_RS06985 (EC725_06985) emrB 1333066..1334604 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EC725_RS06990 (EC725_06990) emrA 1334621..1335793 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EC725_RS06995 (EC725_06995) emrR 1335920..1336450 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EC725_RS07000 (EC725_07000) ygaH 1336541..1336876 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EC725_RS07005 (EC725_07005) ygaZ 1336866..1337603 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=184731 EC725_RS06980 WP_001130211.1 1332487..1333002(+) (luxS) [Escherichia coli strain 13E0725]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=184731 EC725_RS06980 WP_001130211.1 1332487..1333002(+) (luxS) [Escherichia coli strain 13E0725]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment