Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC725_RS04410 Genome accession   NZ_CP020092
Coordinates   841747..842223 (+) Length   158 a.a.
NCBI ID   WP_001186714.1    Uniprot ID   -
Organism   Escherichia coli strain 13E0725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836747..847223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC725_RS04380 (EC725_04380) - 836925..839394 (+) 2470 Protein_788 hypothetical protein -
  EC725_RS27475 - 839470..839925 (+) 456 Protein_789 IrmA family protein -
  EC725_RS28210 - 839960..840088 (+) 129 Protein_790 hypothetical protein -
  EC725_RS28215 (EC725_04390) - 840044..840232 (-) 189 WP_001291444.1 hypothetical protein -
  EC725_RS04400 (EC725_04400) - 840336..841154 (+) 819 WP_001234402.1 DUF932 domain-containing protein -
  EC725_RS04405 (EC725_04405) - 841246..841731 (+) 486 WP_000213709.1 antirestriction protein -
  EC725_RS04410 (EC725_04410) radC 841747..842223 (+) 477 WP_001186714.1 RadC family protein Machinery gene
  EC725_RS04415 (EC725_04415) yeeT 842292..842513 (+) 222 WP_001220316.1 DUF987 domain-containing protein -
  EC725_RS04420 (EC725_04420) - 842588..842962 (+) 375 WP_000017094.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EC725_RS04425 (EC725_04425) - 843009..843386 (+) 378 WP_000854698.1 TA system toxin CbtA family protein -
  EC725_RS04430 (EC725_04430) - 843383..843871 (+) 489 WP_001054226.1 DUF5983 family protein -
  EC725_RS04435 (EC725_04435) - 843883..844080 (+) 198 WP_000839251.1 DUF957 domain-containing protein -
  EC725_RS04440 (EC725_04440) - 844165..844488 (+) 324 Protein_800 restriction endonuclease subunit M -
  EC725_RS04445 (EC725_04445) - 844525..846063 (-) 1539 WP_000998077.1 IS66-like element ISEc8 family transposase -
  EC725_RS04450 (EC725_04450) tnpB 846113..846460 (-) 348 WP_000612591.1 IS66 family insertion sequence element accessory protein TnpB -
  EC725_RS04455 (EC725_04455) - 846457..846837 (-) 381 WP_001171554.1 transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17771.43 Da        Isoelectric Point: 7.6152

>NTDB_id=184723 EC725_RS04410 WP_001186714.1 841747..842223(+) (radC) [Escherichia coli strain 13E0725]
MQQLSFLPGEMTPGERNLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=184723 EC725_RS04410 WP_001186714.1 841747..842223(+) (radC) [Escherichia coli strain 13E0725]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAACCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392