Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   Vc3S01_RS13005 Genome accession   NZ_CP020076
Coordinates   2703409..2706789 (-) Length   1126 a.a.
NCBI ID   WP_077201288.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2698409..2711789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS12980 (Vc3S01_2385) - 2698713..2699141 (+) 429 WP_005382194.1 HIT domain-containing protein -
  Vc3S01_RS12985 (Vc3S01_2386) - 2699291..2699812 (+) 522 WP_077201011.1 YqhA family protein -
  Vc3S01_RS12990 (Vc3S01_2387) - 2699922..2700152 (-) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  Vc3S01_RS12995 (Vc3S01_2388) feoB 2700149..2702425 (-) 2277 WP_050909024.1 Fe(2+) transporter permease subunit FeoB -
  Vc3S01_RS13000 (Vc3S01_2389) - 2702425..2702652 (-) 228 WP_005426705.1 FeoA family protein -
  Vc3S01_RS13005 (Vc3S01_2390) tfoS 2703409..2706789 (-) 3381 WP_077201288.1 AraC family transcriptional regulator Regulator
  Vc3S01_RS13010 (Vc3S01_2391) znuA 2707002..2707883 (-) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  Vc3S01_RS13015 (Vc3S01_2392) znuC 2707962..2708750 (+) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  Vc3S01_RS13020 (Vc3S01_2393) znuB 2708743..2709528 (+) 786 WP_045377675.1 zinc ABC transporter permease subunit ZnuB -
  Vc3S01_RS13025 (Vc3S01_2394) sucD 2709661..2710533 (-) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  Vc3S01_RS13030 (Vc3S01_2395) sucC 2710533..2711699 (-) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126884.23 Da        Isoelectric Point: 6.0665

>NTDB_id=184523 Vc3S01_RS13005 WP_077201288.1 2703409..2706789(-) (tfoS) [Vibrio campbellii strain 20130629003S01]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKAIDHITADGPNRLWISSGYQLFNIDAVNQTMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
HYHLSGQLMKHYSSSSGLINNEFLPGICNVIHRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=184523 Vc3S01_RS13005 WP_077201288.1 2703409..2706789(-) (tfoS) [Vibrio campbellii strain 20130629003S01]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCTGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGTCAAACCACACTGCCAAAATCCGGTAGCTTCCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAGCGCCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGCTCATCCGGGAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCATTGGCGACAACTTCAGGCGTATA
CCTATCAGAAGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATCGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGTACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCCGGCAAGCCTGTTATTAGAATC
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAACAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAATAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTCCAAGTTATCGCAGGCAAGGCAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGACTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
CACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCATCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTGAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAACTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTCCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGGCAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACGCTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.485

100

0.395

Multiple sequence alignment