Detailed information NTG0184449

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM440_RS20660
• Genome accession: NZ_CP020058
• Coordinates: 4016594..4017586 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0061
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4011594..4022586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM440_RS20630 (AM440_21080)	ispD	4011655..4012365 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM440_RS20635 (AM440_21085)	ispF	4012365..4012844 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM440_RS20640 (AM440_21090)	truD	4012841..4013890 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AM440_RS20645 (AM440_21095)	surE	4013871..4014632 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM440_RS20650 (AM440_21100)	pcm	4014626..4015252 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM440_RS20655 (AM440_21105)	nlpD	4015437..4016531 (+)	1095	WP_309446427.1	murein hydrolase activator NlpD	-
AM440_RS20660 (AM440_21110)	rpoS	4016594..4017586 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM440_RS20665 (AM440_21115)	ygbN	4017680..4019044 (-)	1365	WP_000104429.1	GntP family transporter	-
AM440_RS20670 (AM440_21120)	ygbM	4019133..4019909 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AM440_RS20675 (AM440_21125)	ygbL	4019914..4020552 (-)	639	WP_001278994.1	aldolase	-
AM440_RS20680 (AM440_21130)	otnK	4020549..4021811 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=184449 AM440_RS20660 WP_000081550.1 4016594..4017586(+) (rpoS) [Escherichia coli strain AR_0061]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=184449 AM440_RS20660 WP_000081550.1 4016594..4017586(+) (rpoS) [Escherichia coli strain AR_0061]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715