Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM440_RS15675 Genome accession   NZ_CP020058
Coordinates   3055783..3056451 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain AR_0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3050783..3061451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM440_RS15640 (AM440_16025) yicC 3050802..3051665 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  AM440_RS15650 (AM440_16035) rph 3051792..3052508 (+) 717 WP_001247089.1 ribonuclease PH -
  AM440_RS15655 (AM440_16040) pyrE 3052574..3053215 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM440_RS15660 (AM440_16045) slmA 3053252..3053848 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM440_RS15665 (AM440_16050) dut 3053955..3054413 (-) 459 WP_000976070.1 dUTP diphosphatase -
  AM440_RS15670 (AM440_16055) coaBC 3054391..3055611 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM440_RS15675 (AM440_16060) radC 3055783..3056451 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AM440_RS15680 (AM440_16065) rpmB 3056668..3056904 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM440_RS15685 (AM440_16070) rpmG 3056925..3057092 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM440_RS15690 (AM440_16075) mutM 3057190..3057999 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM440_RS15695 (AM440_16080) coaD 3058038..3058517 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AM440_RS15700 (AM440_16085) waaA 3058525..3059802 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM440_RS15705 (AM440_16090) rfaQ 3060215..3061273 (+) 1059 WP_001514654.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=184432 AM440_RS15675 WP_001297375.1 3055783..3056451(+) (radC) [Escherichia coli strain AR_0061]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=184432 AM440_RS15675 WP_001297375.1 3055783..3056451(+) (radC) [Escherichia coli strain AR_0061]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496