Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AM448_RS04740 Genome accession   NZ_CP020055
Coordinates   934330..934845 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0069     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 929330..939845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM448_RS04715 (AM448_04775) ygaZ 929729..930466 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AM448_RS04720 (AM448_04780) ygaH 930456..930791 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  AM448_RS04725 (AM448_04785) emrR 930882..931412 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AM448_RS04730 (AM448_04790) emrA 931539..932711 (+) 1173 WP_001446731.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AM448_RS04735 (AM448_04795) emrB 932728..934266 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AM448_RS04740 (AM448_04800) luxS 934330..934845 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AM448_RS04745 (AM448_04805) gshA 934995..936551 (-) 1557 WP_080028720.1 glutamate--cysteine ligase -
  AM448_RS04750 (AM448_04810) yqaA 936624..937052 (-) 429 WP_001287457.1 YqaA family protein -
  AM448_RS04755 (AM448_04815) yqaB 937049..937615 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AM448_RS04785 (AM448_04845) csrA 939073..939258 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=184319 AM448_RS04740 WP_001130207.1 934330..934845(-) (luxS) [Escherichia coli strain AR_0069]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=184319 AM448_RS04740 WP_001130207.1 934330..934845(-) (luxS) [Escherichia coli strain AR_0069]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment