Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM365_RS23435 Genome accession   NZ_CP020048
Coordinates   4521270..4521746 (-) Length   158 a.a.
NCBI ID   WP_001347688.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4516270..4526746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM365_RS23395 (AM365_23750) tmaR 4517409..4517738 (+) 330 WP_000450409.1 DUF496 family protein -
  AM365_RS29305 (AM365_23755) - 4517839..4518204 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  AM365_RS29120 - 4518475..4518864 (-) 390 WP_001445118.1 IS110 family transposase -
  AM365_RS28645 (AM365_23765) - 4519662..4519742 (-) 81 Protein_4303 hypothetical protein -
  AM365_RS23410 (AM365_23770) - 4519842..4519991 (-) 150 Protein_4304 DUF5983 family protein -
  AM365_RS23415 (AM365_23775) - 4519988..4520365 (-) 378 WP_000854752.1 TA system toxin CbtA family protein -
  AM365_RS23420 (AM365_23780) cbeA 4520455..4520823 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AM365_RS23430 (AM365_23790) yeeT 4520986..4521207 (-) 222 WP_000692329.1 DUF987 domain-containing protein -
  AM365_RS23435 (AM365_23795) radC 4521270..4521746 (-) 477 WP_001347688.1 RadC family protein Machinery gene
  AM365_RS23440 (AM365_23800) - 4521762..4522247 (-) 486 WP_000849582.1 antirestriction protein -
  AM365_RS23445 (AM365_23805) - 4522302..4523120 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  AM365_RS23455 (AM365_23815) - 4523220..4523453 (-) 234 WP_001119729.1 DUF905 family protein -
  AM365_RS23460 (AM365_23820) - 4523532..4523987 (-) 456 WP_000581504.1 IrmA family protein -
  AM365_RS23465 (AM365_23825) - 4524063..4526579 (-) 2517 WP_001348608.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17615.28 Da        Isoelectric Point: 7.6151

>NTDB_id=184297 AM365_RS23435 WP_001347688.1 4521270..4521746(-) (radC) [Escherichia coli strain AR_0118]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=184297 AM365_RS23435 WP_001347688.1 4521270..4521746(-) (radC) [Escherichia coli strain AR_0118]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGTGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCTGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392