Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B5D75_RS05740 Genome accession   NZ_CP020045
Coordinates   1120445..1120939 (+) Length   164 a.a.
NCBI ID   WP_002870821.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 35925     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115445..1125939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D75_RS05725 (B5D75_05725) - 1116831..1118009 (-) 1179 WP_002859276.1 metal-dependent hydrolase -
  B5D75_RS05730 (B5D75_05730) gpsA 1118019..1118915 (-) 897 WP_074468983.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  B5D75_RS05735 (B5D75_05735) gatB 1118912..1120330 (-) 1419 WP_044306131.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  B5D75_RS05740 (B5D75_05740) luxS 1120445..1120939 (+) 495 WP_002870821.1 S-ribosylhomocysteine lyase Regulator
  B5D75_RS05750 (B5D75_05750) - 1121250..1122242 (+) 993 WP_002853499.1 isopenicillin N synthase family dioxygenase -
  B5D75_RS05755 (B5D75_05755) - 1122253..1123023 (+) 771 WP_044306132.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  B5D75_RS05760 (B5D75_05760) metE 1123035..1125299 (+) 2265 WP_044306133.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18285.25 Da        Isoelectric Point: 6.3290

>NTDB_id=184201 B5D75_RS05740 WP_002870821.1 1120445..1120939(+) (luxS) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=184201 B5D75_RS05740 WP_002870821.1 1120445..1120939(+) (luxS) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGCACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGGGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCCATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment